character(1). The location of the hub
cache. Default: “.ExperimentHub” in the user home
directory.
“MAX_DOWNLOADS”:
numeric(1). The integer number of
downloads allowed before triggering an error. This is to help
avoid accidental download of a large number of ExperimentHub
members.
“PROXY”:
request object returned by
httr::use_proxy(). The request object describes a proxy
connection allowing Internet access, usually through a restrictive
firewall. Setting this option sends all ExperimentHub requests through
the proxy. Default: NULL.
In setHubOption("PROXY", value), value can be one of NULL,
a request object returned by httr::use_proxy(), or a
well-formed URL as character(1). The URL can be completely
specified by http://username:password@proxy.dom.com:8080;
username:password and port (e.g. :8080) are optional.
Default values may also be determined by system and global R
environment variables visible before the package is loaded. Use
options or variables preceded by “EXPERIMENT_HUB_”, e.g.,
options(EXPERIMENT_HUB_MAX_DOWNLOADS=10) prior to package load
sets the default number of downloads to 10.
Value
The requested or successfully set option.
Author(s)
Bioconductor Core Team
Examples
getExperimentHubOption("URL")
## Not run:
setExperimentHubOption("CACHE", "~/.myHub")
## End(Not run)
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(ExperimentHub)
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
Loading required package: AnnotationHub
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/ExperimentHub/getExperimentHubOption.Rd_%03d_medium.png", width=480, height=480)
> ### Name: getExperimentHubOption
> ### Title: Get and set options for default ExperimentHub behavior.
> ### Aliases: getExperimentHubOption setExperimentHubOption
> ### Keywords: manip
>
> ### ** Examples
>
> getExperimentHubOption("URL")
[1] "http://experimenthub.bioconductor.org:3000"
> ## Not run:
> ##D setExperimentHubOption("CACHE", "~/.myHub")
> ## End(Not run)
>
>
>
>
>
> dev.off()
null device
1
>