miscellaneous data used in the construction of this FeatureDb package

Description

In the subdirectory inst/build/, there are several scripts that rebuild this FeatureDb from scratch. A handful of intermediate results from dbSNP and comparison of existing datasets are required to patch small gaps in the Illumina manifests. These datasets supply those intermediate results.

Author(s)

Tim Triche, Jr.

Examples

  data(hm450.rsProbes)
  data(hm27.SNP.colors)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(FDb.InfiniumMethylation.hg18)
Loading required package: GenomicFeatures
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: TxDb.Hsapiens.UCSC.hg18.knownGene
Loading required package: org.Hs.eg.db

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/FDb.InfiniumMethylation.hg18/misc.Rd_%03d_medium.png", width=480, height=480)
> ### Name: miscData
> ### Title: miscellaneous data used in the construction of this FeatureDb
> ###   package
> ### Aliases: hg18ToHg19 hm27.controls hm450.controls hm27.SNP.colors
> ###   hm450k.rsProbes SNPs.hg18 unmappable
> ### Keywords: data
> 
> ### ** Examples
> 
> 
>   data(hm450.rsProbes)
Warning message:
In data(hm450.rsProbes) : data set 'hm450.rsProbes' not found
>   data(hm27.SNP.colors)
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>