envelopes

Description

Used by GriegSmith function

Usage

envelopes(iterations = 100, countdata, dimention)

Arguments

Examples

## The function is currently defined as
function(iterations=100,countdata,dimention){



	## Randobly arrange the counts;



	GSpermprev<-array();

	for (i in 1:iterations){
	
		perm<-matrix(sample(as.vector(countdata),size=2^(dimention*2),replace=FALSE),nrow=2^dimention,byrow=TRUE);
		GSperm<-iterate(perm,dimention);

		
		GSpermprev<-cbind(GSpermprev,GSperm[,3])
	


	}


	ret.val<-cbind(apply(GSpermprev[,-1],1,quantile,probs=c(.05)),apply(GSpermprev[,-1],1,quantile,probs=c(.95)))


  }

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(GriegSmith)
Loading required package: spatstat
Loading required package: nlme
Loading required package: rpart

spatstat 1.45-2       (nickname: 'Caretaker Mode') 
For an introduction to spatstat, type 'beginner' 

> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/GriegSmith/envelopes.Rd_%03d_medium.png", width=480, height=480)
> ### Name: envelopes
> ### Title: envelopes
> ### Aliases: envelopes
> ### Keywords: ~kwd1 ~kwd2
> 
> ### ** Examples
> 
> 
> ## The function is currently defined as
> function(iterations=100,countdata,dimention){
+ 
+ 
+ 
+ 	## Randobly arrange the counts;
+ 
+ 
+ 
+ 	GSpermprev<-array();
+ 
+ 	for (i in 1:iterations){
+ 	
+ 		perm<-matrix(sample(as.vector(countdata),size=2^(dimention*2),replace=FALSE),nrow=2^dimention,byrow=TRUE);
+ 		GSperm<-iterate(perm,dimention);
+ 
+ 		
+ 		GSpermprev<-cbind(GSpermprev,GSperm[,3])
+ 	
+ 
+ 
+ 	}
+ 
+ 
+ 	ret.val<-cbind(apply(GSpermprev[,-1],1,quantile,probs=c(.05)),apply(GSpermprev[,-1],1,quantile,probs=c(.95)))
+ 
+ 
+   }
function (iterations = 100, countdata, dimention) 
{
    GSpermprev <- array()
    for (i in 1:iterations) {
        perm <- matrix(sample(as.vector(countdata), size = 2^(dimention * 
            2), replace = FALSE), nrow = 2^dimention, byrow = TRUE)
        GSperm <- iterate(perm, dimention)
        GSpermprev <- cbind(GSpermprev, GSperm[, 3])
    }
    ret.val <- cbind(apply(GSpermprev[, -1], 1, quantile, probs = c(0.05)), 
        apply(GSpermprev[, -1], 1, quantile, probs = c(0.95)))
}
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>