## The function is currently defined as
function(sizematrix,singlecounts){
# print(sizematrix);
xsublength<-sizematrix[1];
ysublength<-sizematrix[2];
xsize<-length(singlecounts[1,]);
ysize<-length(singlecounts[,1]);
xmin<-rep(seq(from=1,to=xsize,by=xsublength),ysize/ysublength);
ymin<-sort(rep(seq(from=1,to=ysize,by=ysublength),xsize/xsublength));
submatricies<-cbind(xmin,ymin);
squaredsums<-sum(apply(submatricies,1,addem,data=singlecounts,xmatlen=xsublength,ymatlen=ysublength));
# print(squaredsums);
## sum up all the numbers in each matrix, square those numbers and add them;
}
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
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Type 'license()' or 'licence()' for distribution details.
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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(GriegSmith)
Loading required package: spatstat
Loading required package: nlme
Loading required package: rpart
spatstat 1.45-2 (nickname: 'Caretaker Mode')
For an introduction to spatstat, type 'beginner'
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/GriegSmith/sumofsquares.Rd_%03d_medium.png", width=480, height=480)
> ### Name: sumofsquares
> ### Title: sumofsquares
> ### Aliases: sumofsquares
> ### Keywords: ~kwd1 ~kwd2
>
> ### ** Examples
>
>
> ## The function is currently defined as
> function(sizematrix,singlecounts){
+
+ # print(sizematrix);
+
+ xsublength<-sizematrix[1];
+ ysublength<-sizematrix[2];
+
+
+ xsize<-length(singlecounts[1,]);
+ ysize<-length(singlecounts[,1]);
+
+
+
+ xmin<-rep(seq(from=1,to=xsize,by=xsublength),ysize/ysublength);
+ ymin<-sort(rep(seq(from=1,to=ysize,by=ysublength),xsize/xsublength));
+
+
+ submatricies<-cbind(xmin,ymin);
+
+ squaredsums<-sum(apply(submatricies,1,addem,data=singlecounts,xmatlen=xsublength,ymatlen=ysublength));
+
+
+ # print(squaredsums);
+
+ ## sum up all the numbers in each matrix, square those numbers and add them;
+
+
+
+ }
function (sizematrix, singlecounts)
{
xsublength <- sizematrix[1]
ysublength <- sizematrix[2]
xsize <- length(singlecounts[1, ])
ysize <- length(singlecounts[, 1])
xmin <- rep(seq(from = 1, to = xsize, by = xsublength), ysize/ysublength)
ymin <- sort(rep(seq(from = 1, to = ysize, by = ysublength),
xsize/xsublength))
submatricies <- cbind(xmin, ymin)
squaredsums <- sum(apply(submatricies, 1, addem, data = singlecounts,
xmatlen = xsublength, ymatlen = ysublength))
}
>
>
>
>
>
> dev.off()
null device
1
>
providing 
.