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Last data update: 2014.03.03
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R: AIC/Deviance calculation
AIC/Deviance calculation
Description
function for AIC/Deviance calculation given index of deleted SNPs
Usage
AIC(case.sub, ctl.sub, lib.sub, lib.sub.names, deleted.snps, ref = "NA")
Arguments
case.sub |
case subjects, two columns for two haplotypes
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ctl.sub |
control subjects, two columns for two haplotypes
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lib.sub |
the alleles library contains allele sequences for those only appear in the case and control samples
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lib.sub.names |
the corresponding names of the alleles
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deleted.snps |
a vector of positions of deleted SNPs
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ref |
allele names for the reference level, the default reference level (ref="NA") is the most common allelels
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Value
logLK |
log-likelihood
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AIC |
AIC
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res |
the result object return from GLM
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dev |
deviance
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df |
degree of freedom
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dev.null |
deviance for null model
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df.null |
degree of freedom for null model
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Author(s)
Xin Huang
Results
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providing 
.