R Graphical Manual

Last data update: 2014.03.03

R: group assignment

collapse

R Documentation

group assignment

function for assign group info to samples after collapsing

collapse(case, ctl, lib, names, snp.de = -1)

`case`	case samples: 1st_col=haplotype_1, 2nd_col=haplotype_2
`ctl`	control samples: 1st_col=haplotype_1, 2nd_col=haplotype_2
`lib`	the tag-SNPs library *.4d with the only alleles appear in sample
`names`	corresponding allele names in the same format as appear in sample
`snp.de`	the column position of a list of SNPs to be deleted, default no delete

Xin Huang