R Graphical Manual

Last data update: 2014.03.03

R: Plotting heatmaps of genetic interaction scores

HD2013SGIHeatmapHuman

R Documentation

Plotting heatmaps of genetic interaction scores

Plotting heatmaps of three-dimensional arrays of interaction scores. Two dimensions of the array will be flattened.

HD2013SGIHeatmapHuman(x, cuts, col, colnames = TRUE, rownames = FALSE, mrow = 10, mcol = 10, cexrow = 1, cexcol = 1, border = 0.1, space = 0.05)

`x`	A three dimensional array to be plotted as a heatmap.
`cuts`	cuts on the values of x for color coding. `length(cuts)` has be one larger than `length(col)`.
`col`	Values of `x` are mapped on color definitions as defined in `col` using the `cuts` argument.
`colnames`	Gene names for columns of the matrix.
`rownames`	Gene names for rows of the matrix.
`mrow`	row margin for printing gene names..
`mcol`	column margin for printing gene names.
`cexrow`	cex for the row names.
`cexcol`	cex for the column names.
`border`	line width of the border.
`space`	spacing between elements of the third array dimension of `x` after flattening.

Nothing is returned.

Bernd Fischer

Laufer, Fischer et al., 2013