A quick way to summarize and view the results of Cline.fit
Usage
Cline.plot(cfit)
Arguments
cfit
An object: the output of Cline.fit.
Details
Creates up to sixteen graphs, depending on which models are fit to the data. For each fitted model, fitted clines are graphed first. For two-parameter models, a bivariate graph of parameter estimates is plotted next (this is left blank for four-parameter models). Finally, a Q-Q plot of squared Mahalanobis distances vs. CHi-squared quantiles is graphed. Putative outlier markers are indicated in red.
Author(s)
Benjamin M. Fitzpatrick
References
Fitzpatrick, B. M. 2012. Alternative forms for genomic clines. In prep
See Also
See gcline.fn for the basic fitting function. Cline.plot provides an easy way to visualize the output of Cline.fit.
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(HIest)
Loading required package: nnet
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/HIest/Cline.plot.Rd_%03d_medium.png", width=480, height=480)
> ### Name: Cline.plot
> ### Title: Graph genomic clines fit to data
> ### Aliases: Cline.plot
> ### Keywords: ~kwd1 ~kwd2
>
> ### ** Examples
>
>
> data(Bluestone)
> BS.fit <- Cline.fit(Bluestone[,1:12],model=c("logit.logistic","Barton"))
2 NA's were omitted
2 NA's were omitted
1 NA's were omitted
1 NA's were omitted
1 NA's were omitted
1 NA's were omitted
1 NA's were omitted
1 NA's were omitted
> Cline.plot(BS.fit)
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> dev.off()
null device
1
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