Last data update: 2014.03.03

 R: Open a streaming connection to a FastQ file
FastQStreamer.initR Documentation

Open a streaming connection to a FastQ file

Description

Open a streaming connection to a FastQ file

Usage

FastQStreamer.init(input_file, input_file2 = NULL, chunk_size,
  subsample_nbreads = NULL, max_nbchunks = NULL)

Arguments

input_file

Path to a FastQ file

input_file2

Optional path to a FastQ file. Default is NULL.

chunk_size

Number of reads per chunk

subsample_nbreads

Optional number of reads to subsample (deterministic) from the input files. Default is NULL.

max_nbchunks

Optional maximal number of chunks to read

Details

Only one FastQStreamer object can be open at any time.

Value

Nothing.

Author(s)

Gregoire Pau

See Also

FastQStreamer.getReads

Results


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO