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Last data update: 2014.03.03

R: Matrix version of HWExact

HWExactMat

R Documentation

Matrix version of HWExact

Description

HWExactMat executes a fast Exact test for HWE for each row in a matrix.

Usage

HWExactMat(X, ...)

Arguments

`X`	A n times 3 matrix of genotypic counts (AA,AB,BB)
`...`	extra arguments that are passed on to `HWExact`

Value

pvalvec

Vector with the p-values of each test

Author(s)

Jan Graffelman jan.graffelman@upc.edu

Examples

X <- HWData(100,10)
colnames(X) <- c("MM","MN","NN")
Results <- HWExactMat(X)
Output <- cbind(X,Results$pvalvec)
print(Output)

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(HardyWeinberg)
Loading required package: mice
Loading required package: Rcpp
mice 2.25 2015-11-09
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/HardyWeinberg/HWExactMat.Rd_%03d_medium.png", width=480, height=480)
> ### Name: HWExactMat
> ### Title: Matrix version of HWExact
> ### Aliases: HWExactMat
> ### Keywords: htest
> 
> ### ** Examples
> 
> X <- HWData(100,10)
> colnames(X) <- c("MM","MN","NN")
> Results <- HWExactMat(X)
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  2 nNN =  8 
H0: HWE (D==0), H1: D <> 0 
D =  0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  9 nMN =  1 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.025 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  3 nMN =  7 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  1.225 p =  0.2198142 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  5 nNN =  4 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  10 nMN =  0 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  5 nNN =  5 
H0: HWE (D==0), H1: D <> 0 
D =  0.625 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  7 nNN =  3 
H0: HWE (D==0), H1: D <> 0 
D =  1.225 p =  0.2198142 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  5 nNN =  4 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  3 nNN =  7 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  8 nMN =  2 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  2 nNN =  8 
H0: HWE (D==0), H1: D <> 0 
D =  0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  9 nMN =  1 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.025 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  8 nMN =  2 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  3 nNN =  7 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  5 nMN =  4 nNN =  1 
H0: HWE (D==0), H1: D <> 0 
D =  -0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  7 nMN =  3 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  5 nNN =  5 
H0: HWE (D==0), H1: D <> 0 
D =  0.625 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  8 nMN =  2 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  5 nMN =  5 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.625 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  4 nNN =  5 
H0: HWE (D==0), H1: D <> 0 
D =  -0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  3 nMN =  7 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  1.225 p =  0.2198142 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  7 nNN =  3 
H0: HWE (D==0), H1: D <> 0 
D =  1.225 p =  0.2198142 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  7 nNN =  2 
H0: HWE (D==0), H1: D <> 0 
D =  1.025 p =  0.5198857 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  7 nMN =  3 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  10 nMN =  0 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  2 nNN =  7 
H0: HWE (D==0), H1: D <> 0 
D =  -0.6 p =  0.3065015 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  2 nMN =  3 nNN =  5 
H0: HWE (D==0), H1: D <> 0 
D =  -0.775 p =  0.4798762 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  6 nNN =  3 
H0: HWE (D==0), H1: D <> 0 
D =  0.6 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  5 nMN =  4 nNN =  1 
H0: HWE (D==0), H1: D <> 0 
D =  -0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  3 nMN =  6 nNN =  1 
H0: HWE (D==0), H1: D <> 0 
D =  0.6 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  6 nMN =  2 nNN =  2 
H0: HWE (D==0), H1: D <> 0 
D =  -1.1 p =  0.1331269 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  4 nMN =  5 nNN =  1 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  1 nNN =  8 
H0: HWE (D==0), H1: D <> 0 
D =  -0.775 p =  0.1578947 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  6 nMN =  4 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.4 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  8 nMN =  2 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  7 nMN =  3 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  3 nMN =  3 nNN =  4 
H0: HWE (D==0), H1: D <> 0 
D =  -0.975 p =  0.2455347 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  6 nMN =  4 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.4 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  6 nMN =  3 nNN =  1 
H0: HWE (D==0), H1: D <> 0 
D =  -0.375 p =  0.4798762 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  5 nNN =  4 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  5 nNN =  4 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  2 nNN =  8 
H0: HWE (D==0), H1: D <> 0 
D =  0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  4 nMN =  5 nNN =  1 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  7 nMN =  3 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  2 nMN =  2 nNN =  6 
H0: HWE (D==0), H1: D <> 0 
D =  -1.1 p =  0.1331269 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  0 nNN =  10 
H0: HWE (D==0), H1: D <> 0 
D =  0 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  4 nNN =  5 
H0: HWE (D==0), H1: D <> 0 
D =  -0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  4 nMN =  4 nNN =  2 
H0: HWE (D==0), H1: D <> 0 
D =  -0.4 p =  0.5732317 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  3 nMN =  4 nNN =  3 
H0: HWE (D==0), H1: D <> 0 
D =  -0.5 p =  0.5635324 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  9 nMN =  1 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.025 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  3 nNN =  7 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  6 nNN =  4 
H0: HWE (D==0), H1: D <> 0 
D =  0.9 p =  0.4798762 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  6 nNN =  3 
H0: HWE (D==0), H1: D <> 0 
D =  0.6 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  8 nMN =  2 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  7 nMN =  2 nNN =  1 
H0: HWE (D==0), H1: D <> 0 
D =  -0.6 p =  0.3065015 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  1 nNN =  8 
H0: HWE (D==0), H1: D <> 0 
D =  -0.775 p =  0.1578947 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  10 nMN =  0 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  5 nNN =  4 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  0 nNN =  10 
H0: HWE (D==0), H1: D <> 0 
D =  0 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  6 nMN =  4 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.4 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  8 nMN =  2 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  8 nMN =  2 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  2 nMN =  8 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  1.6 p =  0.1731365 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  2 nNN =  8 
H0: HWE (D==0), H1: D <> 0 
D =  0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  6 nNN =  3 
H0: HWE (D==0), H1: D <> 0 
D =  0.6 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  6 nMN =  3 nNN =  1 
H0: HWE (D==0), H1: D <> 0 
D =  -0.375 p =  0.4798762 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  9 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  2.025 p =  0.04548702 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  6 nMN =  4 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.4 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  0 nNN =  10 
H0: HWE (D==0), H1: D <> 0 
D =  0 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  5 nMN =  4 nNN =  1 
H0: HWE (D==0), H1: D <> 0 
D =  -0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  4 nMN =  3 nNN =  3 
H0: HWE (D==0), H1: D <> 0 
D =  -0.975 p =  0.2455347 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  9 nMN =  1 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.025 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  5 nMN =  5 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.625 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  2 nNN =  8 
H0: HWE (D==0), H1: D <> 0 
D =  0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  10 nMN =  0 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  7 nNN =  3 
H0: HWE (D==0), H1: D <> 0 
D =  1.225 p =  0.2198142 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  2 nMN =  3 nNN =  5 
H0: HWE (D==0), H1: D <> 0 
D =  -0.775 p =  0.4798762 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  4 nNN =  6 
H0: HWE (D==0), H1: D <> 0 
D =  0.4 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  7 nNN =  2 
H0: HWE (D==0), H1: D <> 0 
D =  1.025 p =  0.5198857 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  5 nNN =  4 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  9 nMN =  1 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.025 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  2 nNN =  8 
H0: HWE (D==0), H1: D <> 0 
D =  0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  3 nNN =  6 
H0: HWE (D==0), H1: D <> 0 
D =  -0.375 p =  0.4798762 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  6 nNN =  3 
H0: HWE (D==0), H1: D <> 0 
D =  0.6 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  5 nMN =  3 nNN =  2 
H0: HWE (D==0), H1: D <> 0 
D =  -0.775 p =  0.4798762 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  6 nMN =  2 nNN =  2 
H0: HWE (D==0), H1: D <> 0 
D =  -1.1 p =  0.1331269 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  8 nMN =  2 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  1 nMN =  5 nNN =  4 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  4 nNN =  6 
H0: HWE (D==0), H1: D <> 0 
D =  0.4 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  6 nNN =  4 
H0: HWE (D==0), H1: D <> 0 
D =  0.9 p =  0.4798762 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  8 nMN =  2 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  4 nMN =  6 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.9 p =  0.4798762 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  3 nMN =  4 nNN =  3 
H0: HWE (D==0), H1: D <> 0 
D =  -0.5 p =  0.5635324 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  5 nMN =  4 nNN =  1 
H0: HWE (D==0), H1: D <> 0 
D =  -0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  3 nMN =  3 nNN =  4 
H0: HWE (D==0), H1: D <> 0 
D =  -0.975 p =  0.2455347 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  8 nMN =  2 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.1 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  4 nMN =  5 nNN =  1 
H0: HWE (D==0), H1: D <> 0 
D =  0.225 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  0 nMN =  0 nNN =  10 
H0: HWE (D==0), H1: D <> 0 
D =  0 p =  1 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  2 nMN =  2 nNN =  6 
H0: HWE (D==0), H1: D <> 0 
D =  -1.1 p =  0.1331269 
Haldane Exact test for Hardy-Weinberg equilibrium (autosomal)
using SELOME p-value
sample counts: nMM =  5 nMN =  5 nNN =  0 
H0: HWE (D==0), H1: D <> 0 
D =  0.625 p =  1 
> Output <- cbind(X,Results$pvalvec)
> print(Output)
       MM MN NN           
  [1,]  0  2  8 1.00000000
  [2,]  9  1  0 1.00000000
  [3,]  3  7  0 0.21981424
  [4,]  1  5  4 1.00000000
  [5,] 10  0  0 1.00000000
  [6,]  0  5  5 1.00000000
  [7,]  0  7  3 0.21981424
  [8,]  1  5  4 1.00000000
  [9,]  0  3  7 1.00000000
 [10,]  8  2  0 1.00000000
 [11,]  0  2  8 1.00000000
 [12,]  9  1  0 1.00000000
 [13,]  8  2  0 1.00000000
 [14,]  0  3  7 1.00000000
 [15,]  5  4  1 1.00000000
 [16,]  7  3  0 1.00000000
 [17,]  0  5  5 1.00000000
 [18,]  8  2  0 1.00000000
 [19,]  5  5  0 1.00000000
 [20,]  1  4  5 1.00000000
 [21,]  3  7  0 0.21981424
 [22,]  0  7  3 0.21981424
 [23,]  1  7  2 0.51988569
 [24,]  7  3  0 1.00000000
 [25,] 10  0  0 1.00000000
 [26,]  1  2  7 0.30650155
 [27,]  2  3  5 0.47987616
 [28,]  1  6  3 1.00000000
 [29,]  5  4  1 1.00000000
 [30,]  3  6  1 1.00000000
 [31,]  6  2  2 0.13312693
 [32,]  4  5  1 1.00000000
 [33,]  1  1  8 0.15789474
 [34,]  6  4  0 1.00000000
 [35,]  8  2  0 1.00000000
 [36,]  7  3  0 1.00000000
 [37,]  3  3  4 0.24553465
 [38,]  6  4  0 1.00000000
 [39,]  6  3  1 0.47987616
 [40,]  1  5  4 1.00000000
 [41,]  1  5  4 1.00000000
 [42,]  0  2  8 1.00000000
 [43,]  4  5  1 1.00000000
 [44,]  7  3  0 1.00000000
 [45,]  2  2  6 0.13312693
 [46,]  0  0 10 1.00000000
 [47,]  1  4  5 1.00000000
 [48,]  4  4  2 0.57323172
 [49,]  3  4  3 0.56353244
 [50,]  9  1  0 1.00000000
 [51,]  0  3  7 1.00000000
 [52,]  0  6  4 0.47987616
 [53,]  1  6  3 1.00000000
 [54,]  8  2  0 1.00000000
 [55,]  7  2  1 0.30650155
 [56,]  1  1  8 0.15789474
 [57,] 10  0  0 1.00000000
 [58,]  1  5  4 1.00000000
 [59,]  0  0 10 1.00000000
 [60,]  6  4  0 1.00000000
 [61,]  8  2  0 1.00000000
 [62,]  8  2  0 1.00000000
 [63,]  2  8  0 0.17313646
 [64,]  0  2  8 1.00000000
 [65,]  1  6  3 1.00000000
 [66,]  6  3  1 0.47987616
 [67,]  1  9  0 0.04548702
 [68,]  6  4  0 1.00000000
 [69,]  0  0 10 1.00000000
 [70,]  5  4  1 1.00000000
 [71,]  4  3  3 0.24553465
 [72,]  9  1  0 1.00000000
 [73,]  5  5  0 1.00000000
 [74,]  0  2  8 1.00000000
 [75,] 10  0  0 1.00000000
 [76,]  0  7  3 0.21981424
 [77,]  2  3  5 0.47987616
 [78,]  0  4  6 1.00000000
 [79,]  1  7  2 0.51988569
 [80,]  1  5  4 1.00000000
 [81,]  9  1  0 1.00000000
 [82,]  0  2  8 1.00000000
 [83,]  1  3  6 0.47987616
 [84,]  1  6  3 1.00000000
 [85,]  5  3  2 0.47987616
 [86,]  6  2  2 0.13312693
 [87,]  8  2  0 1.00000000
 [88,]  1  5  4 1.00000000
 [89,]  0  4  6 1.00000000
 [90,]  0  6  4 0.47987616
 [91,]  8  2  0 1.00000000
 [92,]  4  6  0 0.47987616
 [93,]  3  4  3 0.56353244
 [94,]  5  4  1 1.00000000
 [95,]  3  3  4 0.24553465
 [96,]  8  2  0 1.00000000
 [97,]  4  5  1 1.00000000
 [98,]  0  0 10 1.00000000
 [99,]  2  2  6 0.13312693
[100,]  5  5  0 1.00000000
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>

Matrix version of HWExact

Description

Usage

Arguments

Value

Author(s)

See Also

Examples

Results