R Graphical Manual

Last data update: 2014.03.03

R: Internal Functions

Internal R functions

R Documentation

Internal Functions

These functions are used by other functions in the HyPhy package and not by users

get.recon.1(phy, phy.sub, reconcile)

`phy`	The species tree to be reconciled of class “phylo”
`phy.sub`	The gene tree(s) to be reconciled in class “phylo” or “multiPhylo”
`reconcile`	A description of the relationship between the gene tree and the species tree: either `NULL`; a vector of positive integers of length `length(phy.sub$tip.label)`; or a vector of integers and NA of length `max(phy.sub$edge)`. (See details)

Nathaniel Malachi Hallinan