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Last data update: 2014.03.03 |
Print a Hyde Posterior Distribution ObjectDescriptionPrint a Hyde Posterior Distribution Object Usage## S3 method for class 'HydePosterior' print(x, ...) Arguments
DetailsPrints a brief description of a HydePosterior object. Author(s)Jarrod Dalton and Benjamin Nutter Examples
data(PE, package="HydeNet")
Net <- HydeNetwork(~ wells +
pe | wells +
d.dimer | pregnant*pe +
angio | pe +
treat | d.dimer*angio +
death | pe*treat,
data = PE)
Net <- setDecisionNodes(Net, treat)
compiledNet <- compileJagsModel(Net, n.chains=5)
#* Generate the posterior distribution for the model (but not the
#* decision model)
Posterior <- HydePosterior(compiledNet,
variable.names = c("d.dimer", "death"),
n.iter = 1000)
Posterior
#* Generate the posterior for the decision model
Decision <- compileDecisionModel(Net, n.chains=5)
Posterior_decision <- HydePosterior(Decision,
variable.names = c("d.dimer", "death"),
n.iter = 1000)
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(HydeNet)
Loading required package: nnet
Loading required package: rjags
Loading required package: coda
Linked to JAGS 4.1.0
Loaded modules: basemod,bugs
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/HydeNet/print.HydePosterior.Rd_%03d_medium.png", width=480, height=480)
> ### Name: print.HydePosterior
> ### Title: Print a Hyde Posterior Distribution Object
> ### Aliases: print.HydePosterior
>
> ### ** Examples
>
> data(PE, package="HydeNet")
> Net <- HydeNetwork(~ wells +
+ pe | wells +
+ d.dimer | pregnant*pe +
+ angio | pe +
+ treat | d.dimer*angio +
+ death | pe*treat,
+ data = PE)
>
> Net <- setDecisionNodes(Net, treat)
>
> compiledNet <- compileJagsModel(Net, n.chains=5)
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 0
Unobserved stochastic nodes: 7
Total graph size: 90
Initializing model
Warning messages:
1: In bind_rows_(x, .id) :
binding factor and character vector, coercing into character vector
2: In bind_rows_(x, .id) :
binding factor and character vector, coercing into character vector
3: In bind_rows_(x, .id) :
binding factor and character vector, coercing into character vector
4: In bind_rows_(x, .id) :
binding factor and character vector, coercing into character vector
>
> #* Generate the posterior distribution for the model (but not the
> #* decision model)
> Posterior <- HydePosterior(compiledNet,
+ variable.names = c("d.dimer", "death"),
+ n.iter = 1000)
> Posterior
d.dimer death chain_index obs_index
1 247.2873 No 1 1
2 238.7485 No 1 2
3 305.1562 No 1 3
4 235.4497 No 1 4
5 228.6811 No 1 5
6 234.9754 No 1 6
7 301.5662 No 1 7
8 239.1817 No 1 8
9 221.3127 No 1 9
10 305.6481 Yes 1 10
11 244.3376 No 1 11
12 233.2997 No 1 12
13 243.2408 No 1 13
14 313.1762 No 1 14
15 235.2118 No 1 15
16 234.7534 No 1 16
17 306.0406 Yes 1 17
18 238.7285 No 1 18
19 232.2675 No 1 19
20 249.1515 No 1 20
21 238.0181 Yes 1 21
22 312.4944 No 1 22
23 234.5278 No 1 23
24 235.2908 No 1 24
25 243.3797 No 1 25
26 227.4225 No 1 26
27 237.7872 No 1 27
28 230.3670 No 1 28
29 308.1969 No 1 29
30 235.7989 Yes 1 30
31 226.8627 No 1 31
32 244.0502 No 1 32
33 243.3881 No 1 33
34 245.3890 No 1 34
35 306.8737 No 1 35
36 298.8748 No 1 36
37 251.4798 No 1 37
38 243.4903 No 1 38
39 243.1174 Yes 1 39
40 243.1066 No 1 40
41 236.0250 No 1 41
42 307.9187 No 1 42
43 253.9155 No 1 43
44 230.0983 No 1 44
45 232.7768 No 1 45
46 236.0913 No 1 46
47 236.9065 No 1 47
48 250.5513 No 1 48
49 244.0588 Yes 1 49
50 237.3260 No 1 50
51 249.0747 No 1 51
52 238.1328 No 1 52
53 244.9911 No 1 53
54 245.7614 No 1 54
55 233.0943 No 1 55
56 232.9101 No 1 56
57 269.1073 No 1 57
58 228.4004 No 1 58
59 241.3497 No 1 59
60 244.7902 Yes 1 60
61 240.9373 No 1 61
62 235.5216 No 1 62
63 240.3469 No 1 63
64 300.5878 No 1 64
65 242.8727 No 1 65
66 277.1002 No 1 66
67 235.3935 No 1 67
68 240.8238 No 1 68
69 301.4739 No 1 69
70 241.6251 No 1 70
71 238.8265 No 1 71
72 228.9653 No 1 72
73 318.6245 No 1 73
74 239.1435 No 1 74
75 242.1763 No 1 75
76 240.5068 No 1 76
77 233.6233 No 1 77
78 248.1505 No 1 78
79 249.9776 No 1 79
80 240.5485 No 1 80
81 237.1876 No 1 81
82 233.3827 No 1 82
83 236.2287 No 1 83
84 245.0305 No 1 84
85 245.5365 No 1 85
86 239.3702 No 1 86
87 235.0715 No 1 87
88 236.2495 No 1 88
89 232.5378 No 1 89
90 233.4926 No 1 90
91 232.7234 No 1 91
92 233.0928 No 1 92
93 235.1238 No 1 93
94 332.8785 Yes 1 94
95 314.9864 Yes 1 95
96 273.3464 No 1 96
97 242.0118 No 1 97
98 240.5274 No 1 98
99 265.5543 No 1 99
100 308.7421 No 1 100
101 267.2476 No 1 101
102 305.8359 No 1 102
103 247.7222 No 1 103
104 270.4182 No 1 104
105 311.6060 No 1 105
106 239.7815 No 1 106
107 240.7987 No 1 107
108 238.6827 No 1 108
109 237.6608 No 1 109
110 304.2998 No 1 110
111 237.8531 No 1 111
112 234.7079 No 1 112
113 236.0468 No 1 113
114 237.4912 No 1 114
115 238.4348 No 1 115
116 241.4021 No 1 116
117 266.0497 No 1 117
118 271.9598 No 1 118
119 243.0119 No 1 119
120 241.1803 No 1 120
121 233.9182 No 1 121
122 235.5192 No 1 122
123 240.9851 No 1 123
124 236.7316 No 1 124
125 242.9036 No 1 125
126 234.8351 No 1 126
127 238.6085 Yes 1 127
128 234.4661 No 1 128
129 245.4685 Yes 1 129
130 242.4460 No 1 130
131 234.3238 No 1 131
132 237.4143 No 1 132
133 265.0488 No 1 133
134 246.2637 No 1 134
135 313.4853 No 1 135
136 247.7547 No 1 136
137 239.5756 No 1 137
138 239.8544 No 1 138
139 234.0568 No 1 139
140 234.7683 No 1 140
141 250.9039 No 1 141
142 241.0024 No 1 142
143 229.8780 No 1 143
144 238.9120 No 1 144
145 228.9818 Yes 1 145
146 237.1566 No 1 146
147 242.2100 No 1 147
148 240.6990 No 1 148
149 237.6131 No 1 149
150 243.1732 No 1 150
151 237.2022 No 1 151
152 234.5888 No 1 152
153 232.1900 No 1 153
154 301.4450 No 1 154
155 317.8703 No 1 155
156 236.4774 No 1 156
157 310.3967 Yes 1 157
158 226.7052 No 1 158
159 241.5625 No 1 159
160 231.9269 No 1 160
161 242.9769 No 1 161
162 241.5320 Yes 1 162
163 242.5359 No 1 163
164 243.4453 No 1 164
165 237.7256 No 1 165
166 244.2053 No 1 166
167 240.6562 No 1 167
168 246.3306 No 1 168
169 242.3813 No 1 169
170 251.6996 No 1 170
171 253.9029 No 1 171
172 272.5859 No 1 172
173 247.8992 No 1 173
174 238.7337 No 1 174
175 235.4323 No 1 175
176 239.2423 No 1 176
177 241.4972 No 1 177
178 242.8341 No 1 178
179 239.2256 No 1 179
180 242.2644 No 1 180
181 338.9956 No 1 181
182 240.2126 No 1 182
183 334.4346 No 1 183
184 239.0440 No 1 184
185 237.2560 No 1 185
186 245.4520 No 1 186
187 238.8990 No 1 187
188 246.2617 No 1 188
189 294.2566 No 1 189
190 239.4440 No 1 190
191 235.7072 No 1 191
192 245.7688 No 1 192
193 245.1321 No 1 193
194 241.5976 No 1 194
195 235.4436 No 1 195
196 268.2140 No 1 196
197 237.8036 No 1 197
198 229.1316 No 1 198
199 246.7211 No 1 199
200 237.1150 No 1 200
201 242.5151 No 1 201
202 253.9821 No 1 202
203 245.7155 No 1 203
204 235.6975 No 1 204
205 304.6911 Yes 1 205
206 232.3318 No 1 206
207 229.0532 No 1 207
208 240.6340 No 1 208
209 243.5395 No 1 209
210 238.3754 No 1 210
211 236.6777 No 1 211
212 242.9567 No 1 212
213 241.5179 Yes 1 213
214 307.3679 No 1 214
215 232.3995 No 1 215
216 304.2198 Yes 1 216
217 233.1563 No 1 217
218 242.7695 No 1 218
219 304.1490 No 1 219
220 306.1814 No 1 220
221 271.1693 No 1 221
222 230.5907 No 1 222
223 312.4759 Yes 1 223
224 234.9187 No 1 224
225 241.5493 No 1 225
226 237.5087 No 1 226
227 319.1323 No 1 227
228 247.1739 No 1 228
229 246.9087 No 1 229
230 301.5987 Yes 1 230
231 302.6098 Yes 1 231
232 252.9066 No 1 232
233 236.6930 No 1 233
234 238.4793 No 1 234
235 228.6380 No 1 235
236 246.5032 Yes 1 236
237 236.1156 No 1 237
238 243.4602 No 1 238
239 245.0066 No 1 239
240 242.8745 No 1 240
241 238.4250 No 1 241
242 240.0885 No 1 242
243 240.2172 No 1 243
244 234.5776 No 1 244
245 302.7398 No 1 245
246 307.3459 No 1 246
247 308.3699 Yes 1 247
248 251.9495 No 1 248
249 241.8875 No 1 249
250 262.9635 No 1 250
251 238.5620 No 1 251
252 313.8722 Yes 1 252
253 243.1541 No 1 253
254 236.9089 No 1 254
255 308.6773 No 1 255
256 228.3192 Yes 1 256
257 241.2374 No 1 257
258 239.7947 No 1 258
259 240.6282 No 1 259
260 236.9573 No 1 260
261 241.4269 No 1 261
262 231.5909 No 1 262
263 304.2985 No 1 263
264 255.2226 No 1 264
265 334.9204 No 1 265
266 298.7236 No 1 266
267 242.0448 No 1 267
268 241.0139 No 1 268
269 297.1110 No 1 269
270 315.0963 No 1 270
271 239.6746 No 1 271
272 298.6080 No 1 272
273 249.4919 No 1 273
274 306.2801 Yes 1 274
275 242.7947 No 1 275
276 236.3671 No 1 276
277 237.2330 No 1 277
278 234.3890 No 1 278
279 237.3717 No 1 279
280 251.9467 No 1 280
281 237.8079 No 1 281
282 335.5563 Yes 1 282
283 243.0283 No 1 283
284 235.5590 No 1 284
285 235.6261 No 1 285
286 309.7667 No 1 286
287 297.9941 No 1 287
288 246.8770 No 1 288
289 244.9030 No 1 289
290 262.8766 No 1 290
291 327.4410 No 1 291
292 238.6933 No 1 292
293 236.6087 No 1 293
294 241.6538 No 1 294
295 236.3896 No 1 295
296 238.2651 No 1 296
297 299.0342 Yes 1 297
298 326.5381 No 1 298
299 240.4214 Yes 1 299
300 244.0754 No 1 300
301 243.0436 No 1 301
302 245.2626 No 1 302
303 240.1893 No 1 303
304 231.8201 No 1 304
305 306.1479 No 1 305
306 236.9135 No 1 306
307 305.2031 Yes 1 307
308 235.4515 No 1 308
309 241.2563 No 1 309
310 236.4322 No 1 310
311 247.6504 No 1 311
312 240.0974 No 1 312
313 237.5518 No 1 313
314 263.8958 No 1 314
315 236.1599 No 1 315
316 238.4253 No 1 316
317 311.9031 No 1 317
318 242.6090 No 1 318
319 302.4696 No 1 319
320 278.1915 No 1 320
321 232.1680 No 1 321
322 232.6998 No 1 322
323 243.7943 No 1 323
324 236.4434 No 1 324
325 232.5236 No 1 325
326 232.2726 No 1 326
327 243.0154 No 1 327
328 302.9822 No 1 328
329 229.2322 No 1 329
330 241.9752 No 1 330
331 266.4323 No 1 331
332 316.1733 No 1 332
333 268.0313 No 1 333
334 238.6955 No 1 334
335 245.1519 No 1 335
336 235.7512 No 1 336
337 244.4317 No 1 337
338 234.6495 No 1 338
339 238.3613 No 1 339
340 245.9345 No 1 340
341 235.3262 Yes 1 341
342 245.4482 No 1 342
343 239.2471 No 1 343
344 260.2639 No 1 344
345 229.5613 No 1 345
346 247.1575 No 1 346
347 237.9175 No 1 347
348 238.1042 Yes 1 348
349 234.1389 No 1 349
350 237.9850 No 1 350
351 309.0215 No 1 351
352 235.7589 No 1 352
353 231.5067 Yes 1 353
354 241.0637 No 1 354
355 237.9827 No 1 355
356 317.5608 No 1 356
357 246.2154 No 1 357
358 313.6984 Yes 1 358
359 236.6632 No 1 359
360 247.0556 No 1 360
361 239.6972 No 1 361
362 241.2322 No 1 362
363 305.8891 Yes 1 363
364 240.6350 No 1 364
365 240.8728 No 1 365
366 235.1269 No 1 366
367 243.1088 No 1 367
368 239.7954 No 1 368
369 243.8025 No 1 369
370 250.3899 No 1 370
371 240.9823 No 1 371
372 305.6857 No 1 372
373 246.0390 No 1 373
374 233.9298 No 1 374
375 244.5066 No 1 375
376 248.8665 No 1 376
377 344.3890 Yes 1 377
378 248.6937 No 1 378
379 246.0144 No 1 379
380 268.0617 Yes 1 380
381 242.9219 No 1 381
382 259.8110 No 1 382
383 234.8353 No 1 383
384 241.4532 No 1 384
385 267.0323 No 1 385
386 234.6794 No 1 386
387 240.8688 No 1 387
388 275.1936 Yes 1 388
389 302.6250 No 1 389
390 237.2285 No 1 390
391 236.3104 No 1 391
392 270.1033 No 1 392
393 244.6460 Yes 1 393
394 298.8550 Yes 1 394
395 244.2068 No 1 395
396 233.9180 No 1 396
397 262.6991 No 1 397
398 243.6189 No 1 398
399 241.6697 No 1 399
400 242.3018 Yes 1 400
401 250.9665 No 1 401
402 245.7626 No 1 402
403 238.6537 No 1 403
404 245.5655 No 1 404
405 235.1780 No 1 405
406 237.6143 No 1 406
407 252.7471 No 1 407
408 248.1833 No 1 408
409 252.0660 No 1 409
410 230.4380 Yes 1 410
411 268.2917 No 1 411
412 236.9372 No 1 412
413 236.2062 No 1 413
414 304.2300 No 1 414
415 241.3987 No 1 415
416 240.9032 Yes 1 416
417 238.5379 No 1 417
418 272.8688 No 1 418
419 245.0537 No 1 419
420 247.4673 No 1 420
421 308.5916 Yes 1 421
422 269.0162 No 1 422
423 318.6972 Yes 1 423
424 240.4496 No 1 424
425 232.5211 No 1 425
426 236.7468 No 1 426
427 237.7703 No 1 427
428 240.4058 No 1 428
429 237.1629 No 1 429
430 234.1954 No 1 430
431 238.7834 No 1 431
432 305.3757 Yes 1 432
433 244.7382 No 1 433
434 242.2159 No 1 434
435 241.6654 No 1 435
436 239.5539 No 1 436
437 305.6303 Yes 1 437
438 244.5554 No 1 438
439 231.6470 No 1 439
440 239.4507 No 1 440
441 239.9048 No 1 441
442 241.3255 No 1 442
443 238.2612 No 1 443
444 235.2060 Yes 1 444
445 234.1693 No 1 445
446 307.2462 Yes 1 446
447 242.4484 No 1 447
448 241.5705 No 1 448
449 276.7969 No 1 449
450 242.8818 No 1 450
451 309.4989 No 1 451
452 233.6079 No 1 452
453 246.6016 No 1 453
454 274.2959 No 1 454
455 235.7634 No 1 455
456 312.1674 No 1 456
457 236.6662 No 1 457
458 237.2830 No 1 458
459 240.4097 No 1 459
460 246.5304 No 1 460
461 245.2620 No 1 461
462 237.4464 No 1 462
463 242.9968 No 1 463
464 241.9085 No 1 464
465 237.6097 No 1 465
466 226.0008 No 1 466
467 239.3306 No 1 467
468 247.7871 No 1 468
469 237.7463 No 1 469
470 237.5551 No 1 470
471 241.2995 No 1 471
472 308.9641 No 1 472
473 235.9888 No 1 473
474 248.4245 No 1 474
475 244.1891 No 1 475
476 310.8679 No 1 476
477 244.3901 No 1 477
478 238.3821 No 1 478
479 306.4485 No 1 479
480 230.9287 No 1 480
481 238.4535 No 1 481
482 239.6196 No 1 482
483 253.2816 No 1 483
484 244.7181 No 1 484
485 244.2177 No 1 485
486 235.8366 No 1 486
487 239.3815 No 1 487
488 235.2682 No 1 488
489 252.7345 No 1 489
490 306.0320 No 1 490
491 271.8251 No 1 491
492 229.6592 No 1 492
493 305.4304 Yes 1 493
494 270.6487 No 1 494
495 239.7419 Yes 1 495
496 311.5559 No 1 496
497 247.3669 No 1 497
498 247.6124 No 1 498
499 237.6270 No 1 499
500 309.5522 No 1 500
501 240.5164 No 1 501
502 244.7126 No 1 502
503 239.5873 No 1 503
504 238.9997 No 1 504
505 237.2535 No 1 505
506 242.5285 No 1 506
507 235.5868 No 1 507
508 303.5126 No 1 508
509 241.0940 No 1 509
510 267.7973 No 1 510
511 239.6880 No 1 511
512 246.1474 No 1 512
513 238.6990 No 1 513
514 250.0480 No 1 514
515 304.9576 Yes 1 515
516 297.7244 Yes 1 516
517 247.2485 No 1 517
518 238.7753 No 1 518
519 249.8514 No 1 519
520 237.7399 No 1 520
521 242.4462 No 1 521
522 244.2462 No 1 522
523 243.2306 No 1 523
524 235.2640 No 1 524
525 241.1953 No 1 525
526 240.0580 No 1 526
527 343.0785 No 1 527
528 237.3377 No 1 528
529 238.3671 No 1 529
530 263.0817 No 1 530
531 239.9050 No 1 531
532 304.3755 Yes 1 532
533 241.9967 No 1 533
534 241.2322 No 1 534
535 344.7400 No 1 535
536 245.2733 No 1 536
537 269.5143 No 1 537
538 235.7933 No 1 538
539 316.2472 No 1 539
540 313.9435 No 1 540
541 235.0867 No 1 541
542 236.2749 Yes 1 542
543 239.0228 No 1 543
544 237.9239 No 1 544
545 238.5135 No 1 545
546 248.5015 No 1 546
547 235.6995 No 1 547
548 324.3269 Yes 1 548
549 239.2803 No 1 549
550 231.8515 No 1 550
551 302.9501 No 1 551
552 242.6209 Yes 1 552
553 235.8322 No 1 553
554 241.1148 No 1 554
555 242.5745 No 1 555
556 253.5568 No 1 556
557 233.5143 No 1 557
558 244.7947 No 1 558
559 313.3640 No 1 559
560 242.2868 No 1 560
561 245.0584 No 1 561
562 242.3847 No 1 562
563 234.6526 No 1 563
564 314.6659 No 1 564
565 246.8133 No 1 565
566 241.2791 No 1 566
567 233.1474 No 1 567
568 297.9769 Yes 1 568
569 247.3156 No 1 569
570 242.0418 Yes 1 570
571 245.9219 No 1 571
572 232.3176 No 1 572
573 249.3301 No 1 573
574 241.1263 No 1 574
575 243.6285 No 1 575
576 237.1648 No 1 576
577 342.0922 No 1 577
578 239.2794 No 1 578
579 310.6351 Yes 1 579
580 242.9047 No 1 580
581 245.4160 No 1 581
582 244.5417 Yes 1 582
583 239.0041 No 1 583
584 247.4013 No 1 584
585 296.2339 Yes 1 585
586 244.6047 No 1 586
587 304.2926 No 1 587
588 241.7579 No 1 588
589 230.8892 No 1 589
590 237.8778 No 1 590
591 230.8835 No 1 591
592 236.7314 No 1 592
593 292.8507 No 1 593
594 237.6070 No 1 594
595 240.8282 No 1 595
596 246.8520 No 1 596
597 242.9170 Yes 1 597
598 235.5008 No 1 598
599 232.6076 No 1 599
600 239.0167 No 1 600
601 242.8674 No 1 601
602 242.1715 No 1 602
603 246.3731 Yes 1 603
604 238.8177 No 1 604
605 305.4990 Yes 1 605
606 268.2370 Yes 1 606
607 300.6730 No 1 607
608 238.4409 No 1 608
609 233.5666 Yes 1 609
610 224.0115 No 1 610
611 233.8290 No 1 611
612 237.5078 No 1 612
613 246.4026 No 1 613
614 271.9412 No 1 614
615 249.6574 No 1 615
616 299.7051 No 1 616
617 235.5769 No 1 617
618 239.2247 No 1 618
619 233.9170 No 1 619
620 231.7907 No 1 620
621 239.3862 No 1 621
622 242.3009 No 1 622
623 245.8957 No 1 623
624 236.4389 No 1 624
625 233.7916 No 1 625
626 314.5254 No 1 626
627 237.3724 No 1 627
628 231.4730 No 1 628
629 238.7158 No 1 629
630 307.3349 No 1 630
631 306.8975 No 1 631
632 238.8964 No 1 632
633 299.8122 Yes 1 633
634 307.4095 No 1 634
635 240.3765 No 1 635
636 239.5522 No 1 636
637 238.8724 No 1 637
638 237.2633 No 1 638
639 233.2407 No 1 639
640 239.2647 No 1 640
641 236.9975 No 1 641
642 297.9623 No 1 642
643 233.7036 No 1 643
644 243.1716 No 1 644
645 245.1655 No 1 645
646 252.6842 No 1 646
647 240.8383 No 1 647
648 241.0239 No 1 648
649 235.4538 No 1 649
650 252.8486 No 1 650
651 241.3813 No 1 651
652 231.7370 No 1 652
653 251.9703 Yes 1 653
654 238.9422 No 1 654
655 237.6896 No 1 655
656 244.0740 No 1 656
657 248.1989 No 1 657
658 242.7894 No
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Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and