Extract Parts of an INSPEcT or an INSPEcT_model Object

Description

Operators acting on INSPEcT or INSPEcT_model objects to extract parts. INSPEcT_model objects can be subsetted only by gene. INSPEcT objects can be subsetted either by gene id or time point. In case of subsetting an INSPEcT object by time point, the model should be empty.

Usage

## S4 method for signature 'INSPEcT_model,ANY,ANY'
x[i]

## S4 method for signature 'INSPEcT,ANY,ANY'
x[i, j]

Arguments

Value

An Object of class INSPEcT

See Also

removeModel

Examples

data('mycerIds10', package='INSPEcT')
mycerIds_5genes <- mycerIds10[1:5]
## Not run: 
## This will turn out into an error:
mycerIds_5genes_5tpts <- mycerIds10[1:5, 1:5]

## End(Not run)
## Before subsetting time points, the model should be removed:
mycerIds_5genes_5tpts <- removeModel(mycerIds10)[1:5, 1:5]

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(INSPEcT)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: BiocParallel
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/INSPEcT/Extract.Rd_%03d_medium.png", width=480, height=480)
> ### Name: Extract
> ### Title: Extract Parts of an INSPEcT or an INSPEcT_model Object
> ### Aliases: Extract [,INSPEcT,ANY,ANY-method
> ###   [,INSPEcT_model,ANY,ANY-method
> 
> ### ** Examples
> 
> data('mycerIds10', package='INSPEcT')
> mycerIds_5genes <- mycerIds10[1:5]
> ## Not run: 
> ##D ## This will turn out into an error:
> ##D mycerIds_5genes_5tpts <- mycerIds10[1:5, 1:5]
> ## End(Not run)
> ## Before subsetting time points, the model should be removed:
> mycerIds_5genes_5tpts <- removeModel(mycerIds10)[1:5, 1:5]
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>