Last data update: 2014.03.03

R: Silwood Monocarp Dataset
dataIPMpackSilwoodR Documentation

Silwood Monocarp Dataset

Description

Demographic data of several monocarpic plants from Silwood (UK)

Usage

data(dataIPMpackSilwood)

Format

The format is: chr "dataIPMpackSilwood"

Details

data-frame with headings:

- exactDate: date measurement

- exactDateNext: date next measurement

- id: unique plant id

- Species: species name

- Site: location within Silwood park where plant was measured

- rtcr: root crown diameter, measured with caliper (cm)

- rtcrNext: root crown diameter at next census time (cm)

- ll: length of longest leaf (cm)

- llNext: length of longest leaf at next census (cm)

- rosetteDiam: rosette Diameter (cm()

- rosetteDiamNext: rosette diameter at next census (cm)

- flowered: probability of reproduction (0: individual did not flowered, 1: individual flowered)

- surv: survival (0: dead, 1: survival, NA: not known)

References

Data used in: Metcalf, C.J.E., Rees, M., Alexander, J.M., Rose, K.E. 2006. Growth-survival trade-offs and allometries in rosette-forming perennials. Funct. Ecol. 20, 217-225.

Examples

data(dataIPMpackSilwood)
print(head(dataIPMpackSilwood))
plot(dataIPMpackSilwood$rtcr,dataIPMpackSilwood$rtcrNext,
xlab="size now", ylab="size next", pch=19,log="xy")
## maybe str(dataIPMpackSilwood) ; plot(dataIPMpackSilwood) ...

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(IPMpack)
Loading required package: Matrix
Loading required package: MASS
Loading required package: nlme
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/IPMpack/dataIPMpackSilwood.csv.Rd_%03d_medium.png", width=480, height=480)
> ### Name: dataIPMpackSilwood
> ### Title: Silwood Monocarp Dataset
> ### Aliases: dataIPMpackSilwood
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(dataIPMpackSilwood)
> print(head(dataIPMpackSilwood))
  exactDate exactDateNext id     Species Site rtcr rtcrNext   ll llNext
1   11/5/03        9/5/04  1   S.jacobea    A  2.0       NA 20.0     NA
2   11/5/03        9/5/04  2 C.palustrae    A  1.5      1.2 11.5   18.7
3   11/5/03        9/5/04  3 C.palustrae    A  0.5      0.5  4.0    7.3
4   11/5/03        9/5/04  4   S.jacobea    A  0.5       NA  6.0     NA
5   11/5/03        9/5/04  5 C.palustrae    A  2.0       NA 13.0     NA
6   11/5/03        9/5/04  6   S.jacobea    A  0.7       NA  7.8     NA
  rosetteDiam rosetteDiamNext flowered surv
1          25              NA        0    0
2          17            27.5        0    1
3           8             8.7        0    1
4           9              NA        1    0
5          18              NA        1    0
6          11              NA        0    0
> plot(dataIPMpackSilwood$rtcr,dataIPMpackSilwood$rtcrNext,
+ xlab="size now", ylab="size next", pch=19,log="xy")
> ## maybe str(dataIPMpackSilwood) ; plot(dataIPMpackSilwood) ...
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>