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Last data update: 2014.03.03

R: Makes pictures of survival.

picSurv

R Documentation

Makes pictures of survival.

Description

Produces figures of value for assessing survival fit given data.

Usage

picSurv(dataf, survObj, ncuts = 20, makeTitle = "Survival", ...)

Arguments

`dataf`	a dataframe with columns ‘size’ and ‘sizeNext’(‘size’ is continuous stage variable at t, ‘sizeNext’ is continuous stage at t+1); facultatively, dataf may include ‘covariate’ and ‘covariateNext’ for a single discrete covariate, indicating values at t, and at t+1, respectively; these must take values of sequential integers, starting at ‘1’. For models fitting growth increment, 'incr' or 'logincr' may be directly provided as a column in the dataframe, otherwise they are calculated as dataf$sizeNext-dataf$size or log(dataf$sizeNext-dataf$size), respectively.
`survObj`	an object of class survObj.
`ncuts`	number of consecutive values for which means of survival and continuous (e.g. size) stage are taken for the plotting.
`makeTitle`	character that defines title, defaults to "Survival"
`...`	extra arguments to plot (e.g, ylim, etc).

Value

Returns nothing.

Author(s)

C. Jessica E. Metcalf, Sean M. McMahon, Roberto Salguero-Gomez, Eelke Jongejans & Cory Merow.

Examples

dff <- generateData()
sv1 <- makeSurvObj(dff)
picSurv(dff,sv1)

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(IPMpack)
Loading required package: Matrix
Loading required package: MASS
Loading required package: nlme
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/IPMpack/picSurv.Rd_%03d_medium.png", width=480, height=480)
> ### Name: picSurv
> ### Title: Makes pictures of survival.
> ### Aliases: picSurv
> 
> ### ** Examples
> 
> dff <- generateData()
> sv1 <- makeSurvObj(dff)
> picSurv(dff,sv1)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>