R: Compute and plot the (inversed) ecdf for each ID Map count...
plot.IdMapCounts
R Documentation
Compute and plot the (inversed) ecdf for each ID Map count entry within the IdMapCounts object
Description
Compute and plot the (inversed) ecdf for each ID Map count entry within the IdMapCounts object.
Usage
## S3 method for class 'IdMapCounts'
plot(x, idMapNames=NULL, complement=TRUE, log=TRUE, lineColors=NULL, pointSymbols=NULL, pointColors=NULL, cex.main=1.2, cex.lab=1, cex.axis=1, cex.legend=1, par.zoom=1, ...)
Arguments
idMapNames
optional subset of ID Map names within the counts object
for which ecdf's should be plotted. If NULL (default), the ecdf's for all ID Maps
within the object are plotted.
complement
logical indicating wherether the complementary ecdf should be plotted
The default is TRUE
log
logical indicating if log scale should be used. The default is TRUE.
lineColors
Recyclable vector of line colors. If NULL (default), a set of predefined colors is used.
pointSymbols
Character or numeric recyclable vector of symbols used to plotting points.
If NULL (default), a set of predefined symbols is used.
pointColors
Recyclable vector of point colors. If NULL (default), a set of predefined colors is used.
cex.main
Font size for plot main title. Default is 1.2.
cex.lab
Font size for X and Y axis titles. Default is 1.
cex.axis
Font sixe for axis labels. Default is 1.
cex.legend
Legend font size. Default is 1.
par.zoom
graphics parameters zoom factor. Scales the graphical parameters like cex, lwd, mai etc.
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
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> library(IdMappingAnalysis)
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.7.1 (2016-02-15) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.20.0 (2016-02-17) successfully loaded. See ?R.oo for help.
Attaching package: 'R.oo'
The following objects are masked from 'package:methods':
getClasses, getMethods
The following objects are masked from 'package:base':
attach, detach, gc, load, save
Loading required package: rChoiceDialogs
Loading required package: rJava
Attaching package: 'rJava'
The following object is masked from 'package:R.oo':
clone
This is rChoiceDialogs 1.0.6 2014-09-05
This is IdMappingAnalysis 1.16.0 2013-05-24
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/IdMappingAnalysis/plot.IdMapCounts.Rd_%03d_medium.png", width=480, height=480)
> ### Name: plot.IdMapCounts
> ### Title: Compute and plot the (inversed) ecdf for each ID Map count entry
> ### within the IdMapCounts object
> ### Aliases: plot.IdMapCounts IdMapCounts.plot plot,IdMapCounts-method
> ### Keywords: internal methods
>
> ### ** Examples
>
> jointIdMap<-JointIdMap(examples$identDfList);
> cnts<-jointIdMap$getCounts();
> cnts$plot();
>
>
>
>
>
> dev.off()
null device
1
>
providing 
.