Last data update: 2014.03.03

 R: calculate the CP score
PAscoreR Documentation

calculate the CP score

Description

calculate the CP score by PWM

Usage

PAscore(seqname, pos, str, idx, PWM, genome, ups = 50, dws = 50)

Arguments

seqname

sequence names

pos

genomic positions

str

strands

idx

offset postion

PWM

polyA position weight matrix

genome

an object of BSgenome

ups

upstream base

dws

downstream base

Value

idx list after filter

Author(s)

Jianhong Ou

See Also

PAscore2

Results


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO