Last data update: 2014.03.03

 R: calculate the CP score
PAscore2R Documentation

calculate the CP score

Description

calculate CP score by cleanUpdTSeq

Usage

PAscore2(seqname, pos, str, idx, idx.gp, genome, classifier, classifier_cutoff)

Arguments

seqname

sequence names

pos

genomic positions

str

strands

idx

offset postion

idx.gp

group number of the offset postion

genome

an object of BSgenome

classifier

a cleanUpdTSeq classifier

classifier_cutoff

classifier cutoff value

Value

a data.frame

Author(s)

Jianhong Ou

See Also

PAscore

Results


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO