Last data update: 2014.03.03

 R: extract coverage of 3UTR for CP sites prediction
UTR3TotalCoverageR Documentation

extract coverage of 3UTR for CP sites prediction

Description

extract 3UTR coverage from totalCov according and GRanges object utr3.

Usage

UTR3TotalCoverage(utr3, totalCov, gcCompensation = NA, 
                  mappabilityCompensation = NA, 
                  FFT = FALSE, fft.sm.power = 20)

Arguments

utr3

an GRanges object. must be the output of utr3Annotation

totalCov

total coverage of each sample. must be the output of totalCoverage

gcCompensation

GC compensation vector. Not support yet.

mappabilityCompensation

mappability compensation vector. Not support yet.

FFT

Use FFT smooth or not.

fft.sm.power

the cut-off frequence of FFT smooth.

Value

a list. level 1: chromosome; level 2: each transcripts; level3: data matrix

Author(s)

Jianhong Ou

Results


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO