R Graphical Manual

Last data update: 2014.03.03

R: calculate the usage of long and short form of UTR3

UTR3usage

R Documentation

calculate the usage of long and short form of UTR3

calculate the usage of long and short form of UTR3 for the results of CPsites

UTR3usage(CPsites, coverage, hugeData, BPPARAM = NULL, phmm = FALSE)

`CPsites`	outputs of CPsites
`coverage`	coverage for each sample, outputs of coverageFromBedGraph
`hugeData`	is this dataset consume too much memory? if it is TRUE, the coverage will be saved into tempfiles.
`BPPARAM`	An optional `BiocParallelParam` instance determining the parallel back-end to be used during evaluation, or a list of BiocParallelParam instances, to be applied in sequence for nested calls to bplapply.
`phmm`	prepare data for singleSample analysis? default is FALSE