R: Update individual COD probabilities from InSilicoVA Model...
updateIndiv
R Documentation
Update individual COD probabilities from InSilicoVA Model Fits
Description
This function updates individual probabilities for each death and provide posterior credible intervals for each estimates.
Usage
updateIndiv(object, CI = 0.95, java_option = "-Xmx1g", ...)
Arguments
object
Fitted "insilico" object.
CI
Credible interval for posterior estimates.
java_option
Option to initialize java JVM. Default to “-Xmx1g”, which sets the maximum heap size to be 1GB.
...
Not used.
Value
object Updated "insilico" object.
Author(s)
Zehang Li, Tyler McCormick, Sam Clark
Maintainer: Zehang Li <lizehang@uw.edu>
References
Tyler H. McCormick, Zehang R. Li, Clara Calvert, Amelia C.
Crampin, Kathleen Kahn and Samuel J. Clark Probabilistic cause-of-death
assignment using verbal autopsies, arXiv preprint arXiv:1411.3042http://arxiv.org/abs/1411.3042 (2014)
See Also
insilico, get.indiv
Examples
## Not run:
data(RandomVA1)
fit1a<- insilico(RandomVA1, subpop = NULL,
Nsim = 1000, burnin = 500, thin = 10 , seed = 1,
auto.length = FALSE)
summary(fit1a, id = "d199")
# The following script updates credible interval for individual
fit1b <- updateIndiv(fit1a, CI = 0.95)
summary(fit1b, id = "d199")
## End(Not run)