KC smart comparative

Description

A matrix containing the results the significant regions for a given compKc object and FDR.

Objects from the Class

Objects can not be created by the user directly but rather through getSigRegionsCompKC.

Slots

regionTable:

The significant regions

method:

The method used to create the null distribution

cutoff:

The cutoff for the given false discovery rate which was used to determine the significant regions

fdr:

The false discovery rate used to determine the significant regions

Methods

show

signature(object = "compKcSigRegions"): ...

write.table

signature(object = "compKcSigRegions"): ...

Examples

showClass("compKcSigRegions")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(KCsmart)
Loading required package: siggenes
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: multtest
Loading required package: splines
Loading required package: KernSmooth
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/KCsmart/compKcSigRegions-class.Rd_%03d_medium.png", width=480, height=480)
> ### Name: compKcSigRegions-class
> ### Title: KC smart comparative
> ### Aliases: compKcSigRegions-class show,compKcSigRegions-method
> ### Keywords: classes
> 
> ### ** Examples
> 
> showClass("compKcSigRegions")
Class "compKcSigRegions" [package "KCsmart"]

Slots:
                                                      
Name:  regionTable      method      cutoff         fdr
Class:  data.frame   character     numeric     numeric
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>