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Last data update: 2014.03.03 |
Returns a list of entry identifiers and associated definition for a given database or a given set of database entries.DescriptionReturns a list of entry identifiers and associated definition for a given database or a given set of database entries. UsagekeggList(database, organism) Arguments
ValueA named character vector containing entry identifiers and associated definition. Author(s)Dan Tenenbaum Referenceshttp://www.kegg.jp/kegg/docs/keggapi.html Examples
keggList("pathway") ## returns the list of reference pathways
keggList("pathway", "hsa") ## returns the list of human pathways
keggList("organism") ## returns the list of KEGG organisms with
## taxonomic classification
keggList("hsa") ## returns the entire list of human genes
keggList("T01001") ## same as above
keggList(c("hsa:10458", "ece:Z5100")) ## returns the list of a human gene
## and an E.coli O157 gene
keggList(c("cpd:C01290","gl:G00092")) ## returns the list of a compound entry
## and a glycan entry
keggList(c("C01290+G00092")) ## same as above (prefixes are not necessary)
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(KEGGREST)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/KEGGREST/keggList.Rd_%03d_medium.png", width=480, height=480)
> ### Name: keggList
> ### Title: Returns a list of entry identifiers and associated definition
> ### for a given database or a given set of database entries.
> ### Aliases: keggList
> ### Keywords: list
>
> ### ** Examples
>
> keggList("pathway") ## returns the list of reference pathways
path:map00010
"Glycolysis / Gluconeogenesis"
path:map00020
"Citrate cycle (TCA cycle)"
path:map00030
"Pentose phosphate pathway"
path:map00040
"Pentose and glucuronate interconversions"
path:map00051
"Fructose and mannose metabolism"
path:map00052
"Galactose metabolism"
path:map00053
"Ascorbate and aldarate metabolism"
path:map00061
"Fatty acid biosynthesis"
path:map00062
"Fatty acid elongation"
path:map00071
"Fatty acid degradation"
path:map00072
"Synthesis and degradation of ketone bodies"
path:map00073
"Cutin, suberine and wax biosynthesis"
path:map00100
"Steroid biosynthesis"
path:map00120
"Primary bile acid biosynthesis"
path:map00121
"Secondary bile acid biosynthesis"
path:map00130
"Ubiquinone and other terpenoid-quinone biosynthesis"
path:map00140
"Steroid hormone biosynthesis"
path:map00190
"Oxidative phosphorylation"
path:map00195
"Photosynthesis"
path:map00196
"Photosynthesis - antenna proteins"
path:map00220
"Arginine biosynthesis"
path:map00230
"Purine metabolism"
path:map00231
"Puromycin biosynthesis"
path:map00232
"Caffeine metabolism"
path:map00240
"Pyrimidine metabolism"
path:map00250
"Alanine, aspartate and glutamate metabolism"
path:map00253
"Tetracycline biosynthesis"
path:map00254
"Aflatoxin biosynthesis"
path:map00260
"Glycine, serine and threonine metabolism"
path:map00261
"Monobactam biosynthesis"
path:map00270
"Cysteine and methionine metabolism"
path:map00280
"Valine, leucine and isoleucine degradation"
path:map00281
"Geraniol degradation"
path:map00290
"Valine, leucine and isoleucine biosynthesis"
path:map00300
"Lysine biosynthesis"
path:map00310
"Lysine degradation"
path:map00311
"Penicillin and cephalosporin biosynthesis"
path:map00330
"Arginine and proline metabolism"
path:map00331
"Clavulanic acid biosynthesis"
path:map00332
"Carbapenem biosynthesis"
path:map00340
"Histidine metabolism"
path:map00350
"Tyrosine metabolism"
path:map00351
"DDT degradation"
path:map00360
"Phenylalanine metabolism"
path:map00361
"Chlorocyclohexane and chlorobenzene degradation"
path:map00362
"Benzoate degradation"
path:map00363
"Bisphenol degradation"
path:map00364
"Fluorobenzoate degradation"
path:map00365
"Furfural degradation"
path:map00380
"Tryptophan metabolism"
path:map00400
"Phenylalanine, tyrosine and tryptophan biosynthesis"
path:map00401
"Novobiocin biosynthesis"
path:map00402
"Benzoxazinoid biosynthesis"
path:map00403
"Indole diterpene alkaloid biosynthesis"
path:map00404
"Staurosporine biosynthesis"
path:map00410
"beta-Alanine metabolism"
path:map00430
"Taurine and hypotaurine metabolism"
path:map00440
"Phosphonate and phosphinate metabolism"
path:map00450
"Selenocompound metabolism"
path:map00460
"Cyanoamino acid metabolism"
path:map00471
"D-Glutamine and D-glutamate metabolism"
path:map00472
"D-Arginine and D-ornithine metabolism"
path:map00473
"D-Alanine metabolism"
path:map00480
"Glutathione metabolism"
path:map00500
"Starch and sucrose metabolism"
path:map00510
"N-Glycan biosynthesis"
path:map00511
"Other glycan degradation"
path:map00512
"Mucin type O-Glycan biosynthesis"
path:map00513
"Various types of N-glycan biosynthesis"
path:map00514
"Other types of O-glycan biosynthesis"
path:map00520
"Amino sugar and nucleotide sugar metabolism"
path:map00521
"Streptomycin biosynthesis"
path:map00522
"Biosynthesis of 12-, 14- and 16-membered macrolides"
path:map00523
"Polyketide sugar unit biosynthesis"
path:map00524
"Butirosin and neomycin biosynthesis"
path:map00531
"Glycosaminoglycan degradation"
path:map00532
"Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate"
path:map00533
"Glycosaminoglycan biosynthesis - keratan sulfate"
path:map00534
"Glycosaminoglycan biosynthesis - heparan sulfate / heparin"
path:map00540
"Lipopolysaccharide biosynthesis"
path:map00550
"Peptidoglycan biosynthesis"
path:map00561
"Glycerolipid metabolism"
path:map00562
"Inositol phosphate metabolism"
path:map00563
"Glycosylphosphatidylinositol(GPI)-anchor biosynthesis"
path:map00564
"Glycerophospholipid metabolism"
path:map00565
"Ether lipid metabolism"
path:map00590
"Arachidonic acid metabolism"
path:map00591
"Linoleic acid metabolism"
path:map00592
"alpha-Linolenic acid metabolism"
path:map00600
"Sphingolipid metabolism"
path:map00601
"Glycosphingolipid biosynthesis - lacto and neolacto series"
path:map00603
"Glycosphingolipid biosynthesis - globo series"
path:map00604
"Glycosphingolipid biosynthesis - ganglio series"
path:map00620
"Pyruvate metabolism"
path:map00621
"Dioxin degradation"
path:map00622
"Xylene degradation"
path:map00623
"Toluene degradation"
path:map00624
"Polycyclic aromatic hydrocarbon degradation"
path:map00625
"Chloroalkane and chloroalkene degradation"
path:map00626
"Naphthalene degradation"
path:map00627
"Aminobenzoate degradation"
path:map00630
"Glyoxylate and dicarboxylate metabolism"
path:map00633
"Nitrotoluene degradation"
path:map00640
"Propanoate metabolism"
path:map00642
"Ethylbenzene degradation"
path:map00643
"Styrene degradation"
path:map00650
"Butanoate metabolism"
path:map00660
"C5-Branched dibasic acid metabolism"
path:map00670
"One carbon pool by folate"
path:map00680
"Methane metabolism"
path:map00710
"Carbon fixation in photosynthetic organisms"
path:map00720
"Carbon fixation pathways in prokaryotes"
path:map00730
"Thiamine metabolism"
path:map00740
"Riboflavin metabolism"
path:map00750
"Vitamin B6 metabolism"
path:map00760
"Nicotinate and nicotinamide metabolism"
path:map00770
"Pantothenate and CoA biosynthesis"
path:map00780
"Biotin metabolism"
path:map00785
"Lipoic acid metabolism"
path:map00790
"Folate biosynthesis"
path:map00791
"Atrazine degradation"
path:map00830
"Retinol metabolism"
path:map00860
"Porphyrin and chlorophyll metabolism"
path:map00900
"Terpenoid backbone biosynthesis"
path:map00901
"Indole alkaloid biosynthesis"
path:map00902
"Monoterpenoid biosynthesis"
path:map00903
"Limonene and pinene degradation"
path:map00904
"Diterpenoid biosynthesis"
path:map00905
"Brassinosteroid biosynthesis"
path:map00906
"Carotenoid biosynthesis"
path:map00908
"Zeatin biosynthesis"
path:map00909
"Sesquiterpenoid and triterpenoid biosynthesis"
path:map00910
"Nitrogen metabolism"
path:map00920
"Sulfur metabolism"
path:map00930
"Caprolactam degradation"
path:map00940
"Phenylpropanoid biosynthesis"
path:map00941
"Flavonoid biosynthesis"
path:map00942
"Anthocyanin biosynthesis"
path:map00943
"Isoflavonoid biosynthesis"
path:map00944
"Flavone and flavonol biosynthesis"
path:map00945
"Stilbenoid, diarylheptanoid and gingerol biosynthesis"
path:map00950
"Isoquinoline alkaloid biosynthesis"
path:map00960
"Tropane, piperidine and pyridine alkaloid biosynthesis"
path:map00965
"Betalain biosynthesis"
path:map00966
"Glucosinolate biosynthesis"
path:map00970
"Aminoacyl-tRNA biosynthesis"
path:map00980
"Metabolism of xenobiotics by cytochrome P450"
path:map00981
"Insect hormone biosynthesis"
path:map00982
"Drug metabolism - cytochrome P450"
path:map00983
"Drug metabolism - other enzymes"
path:map00984
"Steroid degradation"
path:map01010
"Overview of biosynthetic pathways"
path:map01040
"Biosynthesis of unsaturated fatty acids"
path:map01051
"Biosynthesis of ansamycins"
path:map01052
"Type I polyketide structures"
path:map01053
"Biosynthesis of siderophore group nonribosomal peptides"
path:map01054
"Nonribosomal peptide structures"
path:map01055
"Biosynthesis of vancomycin group antibiotics"
path:map01056
"Biosynthesis of type II polyketide backbone"
path:map01057
"Biosynthesis of type II polyketide products"
path:map01058
"Acridone alkaloid biosynthesis"
path:map01060
"Biosynthesis of plant secondary metabolites"
path:map01061
"Biosynthesis of phenylpropanoids"
path:map01062
"Biosynthesis of terpenoids and steroids"
path:map01063
"Biosynthesis of alkaloids derived from shikimate pathway"
path:map01064
"Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid"
path:map01065
"Biosynthesis of alkaloids derived from histidine and purine"
path:map01066
"Biosynthesis of alkaloids derived from terpenoid and polyketide"
path:map01070
"Biosynthesis of plant hormones"
path:map01100
"Metabolic pathways"
path:map01110
"Biosynthesis of secondary metabolites"
path:map01120
"Microbial metabolism in diverse environments"
path:map01130
"Biosynthesis of antibiotics"
path:map01200
"Carbon metabolism"
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Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and