Lists the KEGG databases which may be searched.

Description

Lists the KEGG databases which may be searched. In most cases, you can also use a KEGG organism name or T number (genome identifier) as a database name.

Usage

listDatabases()

Value

A character vector of database names.

Author(s)

Dan Tenenbaum

References

http://www.kegg.jp/kegg/docs/keggapi.html

See Also

keggList

Examples

listDatabases()
keggList("organism") ## list all organisms
keggList("hsa") ## list all human genes
keggList("genome") ## list all genome identifiers
keggList("T01001") ## list all human genes

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(KEGGREST)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/KEGGREST/listDatabases.Rd_%03d_medium.png", width=480, height=480)
> ### Name: listDatabases
> ### Title: Lists the KEGG databases which may be searched.
> ### Aliases: listDatabases
> ### Keywords: database databases
> 
> ### ** Examples
> 
> listDatabases()
 [1] "pathway"  "brite"    "module"   "disease"  "drug"     "environ" 
 [7] "ko"       "genome"   "compound" "glycan"   "reaction" "rpair"   
[13] "rclass"   "enzyme"   "organism"
> keggList("organism") ## list all organisms
     T.number                            organism                           
[1,] "http://rest.kegg.jp/list/organism" "http://rest.kegg.jp/list/organism"
     species                             phylogeny                          
[1,] "http://rest.kegg.jp/list/organism" "http://rest.kegg.jp/list/organism"
> keggList("hsa") ## list all human genes
                                                                                                                                                                                                                                                                                                                                                                 hsa:100287010 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC100287010" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:100506548 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC100506548" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:100288846 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC100288846" 
                                                                                                                                                                                                                                                                                                                                                                    hsa:222029 
                                                                                                                                                                                                                                                                                                                          "DKFZp434L192; uncharacterized protein DKFZp434L192" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:100130744 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC100130744" 
                                                                                                                                                                                                                                                                                                                                                                    hsa:146512 
                                                                                                                                                                                                                                                                                                                                            "uncharacterized protein FLJ30679" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:100128288 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC100128288" 
                                                                                                                                                                                                                                                                                                                                                                    hsa:284648 
                                                                                                                                                                                                                                                                                                                                                   "uncharacterized LOC284648" 
                                                                                                                                                                                                                                                                                                                                                                    hsa:200058 
                                                                                                                                                                                                                                                                                                                                            "uncharacterized protein FLJ23867" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:100128573 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC100128573" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:100289361 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC100289361" 
                                                                                                                                                                                                                                                                                                                                                                    hsa:440173 
                                                                                                                                                                                                                                                                                                                                                   "uncharacterized LOC440173" 
                                                                                                                                                                                                                                                                                                                                                                    hsa:646736 
                                                                                                                                                                                                                                                                                                                                                   "uncharacterized LOC646736" 
                                                                                                                                                                                                                                                                                                                                                                    hsa:645644 
                                                                                                                                                                                                                                                                                                                                         "FLJ42627; uncharacterized LOC645644" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:100289230 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC100289230" 
                                                                                                                                                                                                                                                                                                                                                                     hsa:79857 
                                                                                                                                                                                                                                                                                                                                          "FLJ13224; uncharacterized LOC79857" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:100128361 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC100128361" 
                                                                                                                                                                                                                                                                                                                                                                     hsa:54553 
                                                                                                                                                                                                                                                                                                                                       "uncharacterized protein DKFZP434I0714" 
                                                                                                                                                                                                                                                                                                                                                                    hsa:284578 
                                                                                                                                                                                                                                                                                                                                                   "uncharacterized LOC284578" 
                                                                                                                                                                                                                                                                                                                                                                    hsa:145474 
                                                                                                                                                                                                                                                                                                                                                   "uncharacterized LOC145474" 
                                                                                                                                                                                                                                                                                                                                                                    hsa:729609 
                                                                                                                                                                                                                                                                                                                                                   "uncharacterized LOC729609" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:100190986 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC100190986" 
                                                                                                                                                                                                                                                                                                                                                                    hsa:653160 
                                                                                                                                                                                                                                                                                                                                                   "uncharacterized LOC653160" 
                                                                                                                                                                                                                                                                                                                                                                    hsa:401105 
                                                                                                                                                                                                                                                                                                                               "FLJ42393, AVPC1948; uncharacterized LOC401105" 
                                                                                                                                                                                                                                                                                                                                                                    hsa:150967 
                                                                                                                                                                                                                                                                                                                                                        "PKI55; DKFZp434H1419" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:100129550 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC100129550" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:101927178 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC101927178" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:101928627 
                                                                                                                                                                                                                                                                                                                                  "RP11-87M18.2; uncharacterized LOC101928627" 
                                                                                                                                                                                                                                                                                                                                                                    hsa:648987 
                                                                                                                                                                                                                                                                                                                                                   "uncharacterized LOC648987" 
                                                                                                                                                                                                                                                                                                                                                                    hsa:148696 
                                                                                                                                                                                                                                                                                                                                                   "uncharacterized LOC148696" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:100270746 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC100270746" 
                                                                                                                                                                                                                                                                                                                                                                    hsa:651430 
                                                                                                                                                                                                                                                                                                                                         "FLJ38576; uncharacterized LOC651430" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:100130899 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC100130899" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:100287042 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC100287042" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:101593348 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC101593348" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:100131257 
                                                                                                                                                                                                                                                                                                                                          "zinc finger protein 655 pseudogene" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:100131626 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC100131626" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:102800447 
                                                                                                                                                                                                                                                                                                                                                "uncharacterized LOC102800447" 
                                                                                                                                                                                                                                                                                                                                                                 hsa:100130075