class 'KEGGGraphics'

Description

A class to represent 'graphics' element in KGML files

Objects from the Class

This method is mainly used to extract visualization information from KGML files.

Objects can be created by calling parseGraphics

Slots

name:

Object of class "character" graphics name

x:

Object of class "integer" x coordinate in KEGG figure

y:

Object of class "integer" y coordinate in KEGG figure

type:

Object of class "character" graphics type (shape)

width:

Object of class "integer" witdh of the symbol

height:

Object of class "integer" height of the symbol

fgcolor:

Object of class "character" foreground color

bgcolor:

Object of class "character" background color

Author(s)

Jitao David Zhang mailto:jitao_david.zhang@roche.com

References

KGML Manual http://www.genome.jp/kegg/docs/xml/

See Also

parseGraphics

Examples

showClass("KEGGGraphics")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
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Type 'q()' to quit R.

> library(KEGGgraph)

Attaching package: 'KEGGgraph'

The following object is masked from 'package:graphics':

    plot

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/KEGGgraph/KEGGGraphics-class.Rd_%03d_medium.png", width=480, height=480)
> ### Name: KEGGGraphics-class
> ### Title: class 'KEGGGraphics'
> ### Aliases: KEGGGraphics-class
> ### Keywords: classes
> 
> ### ** Examples
> 
> showClass("KEGGGraphics")
Class "KEGGGraphics" [package "KEGGgraph"]

Slots:
                                                                            
Name:       name         x         y      type     width    height   fgcolor
Class: character   integer   integer character   integer   integer character
                
Name:    bgcolor
Class: character
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>