Class "KEGGGroup"

Description

Class to represent 'group' nodes in KEGG pathways

Objects from the Class

The objects are usually created by parseEntry function and is not intended to be called directly by users.

Slots

component:

Component of the group

entryID:

see the slot of KEGGNode-class

graphics:

see the slot of KEGGNode-class

link:

see the slot of KEGGNode-class

map:

see the slot of KEGGNode-class

name:

see the slot of KEGGNode-class

reaction:

see the slot of KEGGNode-class

type:

see the slot of KEGGNode-class

Extends

Class "KEGGNode", directly.

Methods

getComponent

signature(object = "KEGGNode"): returns components of the group, in a vector of strings

Author(s)

Jitao David Zhang mailto:jitao_david.zhang@roche.com

See Also

KEGGNode-class

Examples

showClass("KEGGGroup")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(KEGGgraph)

Attaching package: 'KEGGgraph'

The following object is masked from 'package:graphics':

    plot

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/KEGGgraph/KEGGGroup-class.Rd_%03d_medium.png", width=480, height=480)
> ### Name: KEGGGroup-class
> ### Title: Class "KEGGGroup"
> ### Aliases: KEGGGroup-class getComponent getComponent,KEGGGroup-method
> ### Keywords: classes
> 
> ### ** Examples
> 
> showClass("KEGGGroup")
Class "KEGGGroup" [package "KEGGgraph"]

Slots:
                                                                       
Name:     component      entryID         name         type         link
Class:    character    character    character    character    character
                                             
Name:      reaction          map     graphics
Class:    character    character KEGGGraphics

Extends: "KEGGNode"
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>