colors used to represent the values. (See also 'Details')
range
values out of the range will be modified to in the range.
breaks
a numeric vector of three or more cut points giving the number of intervals into which x is to be cut. See also 'Details'
showColorBar
Logical. Indicates display the colorbar or not. The default value is TURE.
Details
A colorbar would also be ploted. The returned colors of the function can be used in function plot_profile.
if breaks not equal to NA, col must have the same length with breaks-1.
Value
a matrix equal to x, but the values were instead by colors.
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> library(KEGGprofile)
KEGG.db contains mappings based on older data because the original
resource was removed from the the public domain before the most
recent update was produced. This package should now be considered
deprecated and future versions of Bioconductor may not have it
available. Users who want more current data are encouraged to look
at the KEGGREST or reactome.db packages
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/KEGGprofile/col_by_value.Rd_%03d_medium.png", width=480, height=480)
> ### Name: col_by_value
> ### Title: col_by_value
> ### Aliases: col_by_value
>
> ### ** Examples
>
> data(pho_sites_count)
> col<-col_by_value(pho_sites_count,col=colorRampPalette(c('white','khaki2'))(4),breaks=c(0,1,4,10,Inf))
>
>
>
>
>
> dev.off()
null device
1
>