Prints a measure of uncertainty for a function of any dimension.

Description

This function prints in the whole input domain the value of a given measure of uncertainty. Possible measures are "pn" (the probability of excursion) and measures specific to a sampling criterion: "sur", "timse" and "imse". This function can be used to print relevant outputs after having used the function EGI.

Usage

print_uncertainty(model, T, type = "pn", ...)

Arguments

Value

the integrated uncertainty

Author(s)

Clement Chevalier (IMSV, Switzerland, and IRSN, France)

References

Bect J., Ginsbourger D., Li L., Picheny V., Vazquez E. (2010), Sequential design of computer experiments for the estimation of a probability of failure, Statistics and Computing, pp.1-21, 2011, http://arxiv.org/abs/1009.5177

See Also

EGI

Examples

#print_uncertainty

set.seed(8)
N <- 9 #number of observations
T <- 80 #threshold
testfun <- branin
lower <- c(0,0)
upper <- c(1,1)

#a 9 points initial design
design <- data.frame( matrix(runif(2*N),ncol=2) )
response <- testfun(design)

#km object with matern3_2 covariance
#params estimated by ML from the observations
model <- km(formula=~., design = design, 
	response = response,covtype="matern3_2")

#you could do many plots, but only one is run here
print_uncertainty(model=model,T=T,main="probability of excursion",type="pn")
#print_uncertainty(model=model,T=T,main="Vorob'ev uncertainty",type="vorob")
#print_uncertainty(model=model,T=T,main="imse uncertainty",type="imse")
#print_uncertainty(model=model,T=T,main="timse uncertainty",type="timse")
#print_uncertainty(model=model,T=T,main="sur uncertainty",type="sur")
#print_uncertainty(model=model,T=T,main="probability of excursion",type="pn",
#vorobmean=TRUE)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(KrigInv)
Loading required package: DiceKriging
Loading required package: pbivnorm
Loading required package: rgenoud
##  rgenoud (Version 5.7-12.4, Build Date: 2015-07-19)
##  See http://sekhon.berkeley.edu/rgenoud for additional documentation.
##  Please cite software as:
##   Walter Mebane, Jr. and Jasjeet S. Sekhon. 2011.
##   ``Genetic Optimization Using Derivatives: The rgenoud package for R.''
##   Journal of Statistical Software, 42(11): 1-26. 
##

Loading required package: randtoolbox
Loading required package: rngWELL
This is randtoolbox. For overview, type 'help("randtoolbox")'.
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/KrigInv/print_uncertainty.Rd_%03d_medium.png", width=480, height=480)
> ### Name: print_uncertainty
> ### Title: Prints a measure of uncertainty for a function of any dimension.
> ### Aliases: print_uncertainty
> 
> ### ** Examples
> 
> #print_uncertainty
> 
> set.seed(8)
> N <- 9 #number of observations
> T <- 80 #threshold
> testfun <- branin
> lower <- c(0,0)
> upper <- c(1,1)
> 
> #a 9 points initial design
> design <- data.frame( matrix(runif(2*N),ncol=2) )
> response <- testfun(design)
> 
> #km object with matern3_2 covariance
> #params estimated by ML from the observations
> model <- km(formula=~., design = design, 
+ 	response = response,covtype="matern3_2")

optimisation start
------------------
* estimation method   : MLE 
* optimisation method : BFGS 
* analytical gradient : used
* trend model : ~X1 + X2
* covariance model : 
  - type :  matern3_2 
  - nugget : NO
  - parameters lower bounds :  1e-10 1e-10 
  - parameters upper bounds :  1.448893 1.853021 
  - best initial criterion value(s) :  -25.38168 

N = 2, M = 5 machine precision = 2.22045e-16
At X0, 0 variables are exactly at the bounds
At iterate     0  f=       25.382  |proj g|=      0.19431
At iterate     1  f =       25.027  |proj g|=       0.13259
At iterate     2  f =       25.014  |proj g|=        1.6725
At iterate     3  f =       25.002  |proj g|=       0.15969
At iterate     4  f =       25.001  |proj g|=       0.17792
At iterate     5  f =       24.999  |proj g|=       0.31318
At iterate     6  f =       24.998  |proj g|=       0.14968
At iterate     7  f =       24.998  |proj g|=       0.03446
At iterate     8  f =       24.998  |proj g|=       0.03458
At iterate     9  f =       24.998  |proj g|=     0.0084816
At iterate    10  f =       24.998  |proj g|=      0.038393
At iterate    11  f =       24.997  |proj g|=        1.3196
At iterate    12  f =       24.997  |proj g|=        1.3327
At iterate    13  f =       24.994  |proj g|=        1.8077
At iterate    14  f =       24.991  |proj g|=        1.8106
At iterate    15  f =       24.975  |proj g|=        1.8136
At iterate    16  f =       24.937  |proj g|=        1.8202
At iterate    17  f =       24.816  |proj g|=        1.8136
At iterate    18  f =       24.652  |proj g|=       0.81261
At iterate    19  f =       24.652  |proj g|=       0.25743
At iterate    20  f =       24.651  |proj g|=     0.0033442
At iterate    21  f =       24.651  |proj g|=    1.4045e-05

iterations 21
function evaluations 30
segments explored during Cauchy searches 22
BFGS updates skipped 0
active bounds at final generalized Cauchy point 1
norm of the final projected gradient 1.40447e-05
final function value 24.6515

F = 24.6515
final  value 24.651471 
converged
> 
> #you could do many plots, but only one is run here
> print_uncertainty(model=model,T=T,main="probability of excursion",type="pn")
[1] 0.09380482
> #print_uncertainty(model=model,T=T,main="Vorob'ev uncertainty",type="vorob")
> #print_uncertainty(model=model,T=T,main="imse uncertainty",type="imse")
> #print_uncertainty(model=model,T=T,main="timse uncertainty",type="timse")
> #print_uncertainty(model=model,T=T,main="sur uncertainty",type="sur")
> #print_uncertainty(model=model,T=T,main="probability of excursion",type="pn",
> #vorobmean=TRUE)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>