Graphical display of LBE objects.

Description

Graphical display of LBE objects.

Usage

LBEplot(LBEobj, rng = c(0, 0.1), plot.type = c("multiple", "main"), legend = TRUE)

Arguments

Details

If plot.type == "multiple", the following graphics are displayed: 1. The histogram of the p-values. 2. The estimated q-values versus the p-values. 3. The number of significant tests versus each qvalue cutoff. 4. The number of expected false positives versus the number of significant tests.

Note

The function LBEplot is analogous to the function qplot from the package qvalue.

Author(s)

Cyril Dalmasso

See Also

LBE, LBEsummary, LBEwrite, LBEa

Examples

## start
data(hedenfalk.pval)
res=LBE(hedenfalk.pval,plot.type="none")
LBEplot(res)
LBEplot(res,plot.type="main")
LBEplot(res,plot.type="main",legend=FALSE)
## end

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(LBE)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/LBE/LBEplot.Rd_%03d_medium.png", width=480, height=480)
> ### Name: LBEplot
> ### Title: Graphical display of LBE objects.
> ### Aliases: LBEplot
> ### Keywords: htest
> 
> ### ** Examples
> 
> ## start
> data(hedenfalk.pval)
> res=LBE(hedenfalk.pval,plot.type="none")
> LBEplot(res)
> LBEplot(res,plot.type="main")
> LBEplot(res,plot.type="main",legend=FALSE)
> ## end
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>