probabilities parameters to be used for examples

Description

a list of probability parameters such as the probability that a founder is assigned to each class, the transition probabilities and the probability that a child is symptomatic.

Usage

data(probs)

Details

probs a list of probability parameters:

For models with familial dependence:

p

a probability vector, each p[c] is the probability that an symptomatic founder is in class c for c>=1,

p0

the probability that a founder without symptoms is in class 0,

p.trans

an array of dimension K times K+1 times K+1, where K is the number of latent classes of the model, and is such that p.trans[c_i,c_1,c_2] is the conditional probability that a symptomatic individual i is in class c_i given that his parents are in classes c_1 and c_2,

p0connect

a vector of length K, where p0connect[c] is the probability that a connector without symptoms is in class 0, given that one of his parents is in class c>=1 and the other in class 0,

p.found

the probability that a founder is symptomatic,

p.child

the probability that a child is symptomatic,

For models without familial dependence, all individuals are independent:

p

a probability vector, each p[c] is the probability that an symptomatic individual is in class c for c>=1,

p0

the probability that an individual without symptoms is in class 0,

p.aff

the probability that an individual is symptomatic,

Examples

data(probs)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(LCAextend)
Loading required package: boot
Loading required package: mvtnorm
Loading required package: rms
Loading required package: Hmisc
Loading required package: lattice

Attaching package: 'lattice'

The following object is masked from 'package:boot':

    melanoma

Loading required package: survival

Attaching package: 'survival'

The following object is masked from 'package:boot':

    aml

Loading required package: Formula
Loading required package: ggplot2

Attaching package: 'Hmisc'

The following objects are masked from 'package:base':

    format.pval, round.POSIXt, trunc.POSIXt, units

Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve

Loading required package: kinship2
Loading required package: Matrix
Loading required package: quadprog
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/LCAextend/probs.Rd_%03d_medium.png", width=480, height=480)
> ### Name: probs
> ### Title: probabilities parameters to be used for examples
> ### Aliases: probs
> 
> ### ** Examples
> 
> data(probs)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>