1-sided Fisher's test of linkage disequilibrium

Description

1-sided Fisher's test of linkage disequilibrium

Usage

Fisher1sided(ctable, side = "great")

Arguments

Value

Author(s)

Alex Lewin

References

Kulinskaya and Lewin 2008

Examples

ctable <- c(4,5,1,20)
Fisher1sided(ctable) 

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(LDtests)
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/LDtests/Fisher1sided.Rd_%03d_medium.png", width=480, height=480)
> ### Name: Fisher1sided
> ### Title: 1-sided Fisher's test of linkage disequilibrium
> ### Aliases: Fisher1sided
> ### Keywords: htest
> 
> ### ** Examples
> 
> ctable <- c(4,5,1,20)
> Fisher1sided(ctable) 
[1] 0 1 2 3 4 5
$pval.Fish
[1] 0.01945181

$Prob
[1] 0.01856764

$yobs
[1] 4

$n1
[1] 9

$n2
[1] 5

$nn
[1] 30

> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>