P-values for three different tests of HWE

Description

Calculates conditional p-values proposed in Kulinskaya (2008) to overcome the problems of asymetric distributions, the Haldane 2-sided test as implemented by Wiggington et al (2005) and the 1-sided test for inbreeding.

Usage

HWE2sided(geno, qplot = F, title = NULL)

Arguments

Value

Author(s)

Alex Lewin

References

Kulinskaya and Lewin 2008

See Also

HWE2sided.table

Examples

geno <- c(20,73,7)
HWE2sided(geno)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(LDtests)
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/LDtests/HWE2sided.Rd_%03d_medium.png", width=480, height=480)
> ### Name: HWE2sided
> ### Title: P-values for three different tests of HWE
> ### Aliases: HWE2sided
> ### Keywords: htest
> 
> ### ** Examples
> 
> geno <- c(20,73,7)
> HWE2sided(geno)
$pval.cond
[1] 0.01248399

$pval.H
[1] 0.007101873

$pval.inbreed
[1] 0.007101873

> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>