Likelihood Estimation of Admixture in Parents From Offspring Genotypes

Description

Takes genotype data for a single individual, and allele frequencies for multiple populations, and returns estimations of admixture proportions for the individual, as well as the admixture proportion of their two parents.

Details

Use LEAPFrOG when regular genotype data is available (0,1 or 2 alleles at each SNP). Use LEAPFrOG_EM when phased haplotypes are available. Plot results using LEAPFrOG_plot

Author(s)

Daniel Crouch and Michael Weale

Maintainer: Daniel Crouch - daniel.crouch@oncology.ox.ac.uk

References

Crouch & Weale (2011), European Journal of Human Genetics

See Also

LEAPFrOG_plot,LEAPFrOG_EM,LEAPFrOG,BEAPFrOG

Results