Linear inverse model specification for the Intertidal mudflat food web on the Atlantic coast of France

Description

Linear inverse model specification for the Intertidal mudflat food web on the Atlantic coast of France as in Leguerrier et al., 2003.

The foodweb comprises 16 functional compartments and 3 external compartments, connected with 95 flows.

Units of the flows are g C/m2/year

The linear inverse model LIMBrouageMudflat is generated from the file BrouageMudflat.input which can be found in subdirectory /examples/FoodWeb of the package directory

In this subdirectory you will find many foodweb example input files

These files can be read using Read and their output processed by Setup which will produce a linear inverse problem specification similar to LIMBrouageMudflat

Usage

data(LIMBrouageMudflat)

Format

a list of matrices, vectors, names and values that specify the linear inverse model problem.

see the return value of Setup for more information about this list

A more complete description of this structures is in vignette("LIM")

Author(s)

Karline Soetaert <karline.soetaert@nioz.nl> Dick van Oevelen <dick.vanoevelen@nioz.nl>

References

Leguerrier, D., Niquil, N., Boileau, N., Rzeznik, J., Sauriau, P.G., Le Moine, O., Bacher, C., 2003. Numerical analysis of the food web of an intertidal mudflat ecosystem on the Atlantic coast of France. Marine Ecology Progress Series 246, 17-37.

See Also

browseURL(paste(system.file(package="LIM"), "/doc/examples/Foodweb/", sep=""))

contains "BrouageMudflat.input", the input file; read this with Setup

LIMTakapoto, LIMRigaSummer and many others

Examples

Brouage <- Flowmatrix(LIMBrouageMudflat)
plotweb(Brouage, main = "Brouage mudflat food web", sub = "gC/m2/yr")
# Some ranges are infinite ->marked with "*
Plotranges(LIMBrouageMudflat, lab.cex = 0.7, sub = "*=unbounded",
           xlab = "gC/m2/year", main = "Brouage mudflat, Flowranges")
Plotranges(LIMBrouageMudflat, type = "V", lab.cex = 0.7, 
           sub = "*=unbounded",
           xlab = "gC/m2/year",main="Brouage mudflat, Variable ranges")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(LIM)
Loading required package: limSolve
Loading required package: diagram
Loading required package: shape
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/LIM/LIMBrouageMudflat.Rd_%03d_medium.png", width=480, height=480)
> ### Name: LIMBrouageMudflat
> ### Title: Linear inverse model specification for the Intertidal mudflat
> ###   food web on the Atlantic coast of France
> ### Aliases: LIMBrouageMudflat
> ### Keywords: datasets
> 
> ### ** Examples
> 
> Brouage <- Flowmatrix(LIMBrouageMudflat)
> plotweb(Brouage, main = "Brouage mudflat food web", sub = "gC/m2/yr")
> # Some ranges are infinite ->marked with "*
> Plotranges(LIMBrouageMudflat, lab.cex = 0.7, sub = "*=unbounded",
+            xlab = "gC/m2/year", main = "Brouage mudflat, Flowranges")
> Plotranges(LIMBrouageMudflat, type = "V", lab.cex = 0.7, 
+            sub = "*=unbounded",
+            xlab = "gC/m2/year",main="Brouage mudflat, Variable ranges")
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>