R: Linear inverse model specification for the Deep-water Coral...
LIMCoralRockall
R Documentation
Linear inverse model specification for the Deep-water Coral food web
at Rockall Bank
Description
Linear inverse model specification for the deep-water coral ecosystem
at Rockall Bank, North-East Atlantic. See van Oevelen et al. (2009)
Units of the flows are mmol C/m2/day
The linear inverse model LIMCoralRockall is generated from the file
‘CWCRockall.input’ which can be found in
subdirectory /examples/FoodWeb of the package directory
Usage
data(LIMCoralRockall)
Format
a list of matrices, vectors, names and values that specify the linear
inverse model problem.
see the return value of Setup for more information about
this list
A more complete description of this structure is in vignette("LIM")
Author(s)
Dick van Oevelen <dick.vanoevelen@nioz.nl>
Karline Soetaert <karline.soetaert@nioz.nl>
References
van Oevelen, Dick, Gerard Duineveld, Marc Lavaleye, Furu Mienis,
Karline Soetaert, and Carlo H. R. Heip, 2009.
The cold-water coral community as hotspot of carbon cycling on
continental margins: A food web analysis from Rockall Bank
(northeast Atlantic). Limnology and Oceangraphy 54 : 1829 – 1844.
contains "CWCRockall.input", the input file; read this with Setup
LIMTakapoto, LIMRigaSummer and many others
Examples
Coral <- Flowmatrix(LIMCoralRockall)
plotweb(Coral, main = "Deep Water Coral Foodweb, Rockall Bank",
sub = "mmolC/m2/day", lab.size = 0.8)
## Not run:
xr <- LIMCoralRockall$NUnknowns
i1 <- 1:(xr/2)
i2 <- (xr/2+1):xr
pm <- par(mfrow = c(1, 1))
Simplest <- Ldei(LIMCoralRockall)$X
Ranges <- Xranges(LIMCoralRockall)
Plotranges(Ranges[i1, 1], Ranges[i1, 2], Simplest[i1], lab.cex = 0.7,
main = "Deep Water Coral - ranges part 1")
Plotranges(Ranges[i2, 1], Ranges[i2, 2], Simplest[i2], lab.cex = 0.7,
main = "Deep Water Coral - ranges part 2")
par(mfrow = pm)
## End(Not run)
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(LIM)
Loading required package: limSolve
Loading required package: diagram
Loading required package: shape
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/LIM/LIMCoralRockall.Rd_%03d_medium.png", width=480, height=480)
> ### Name: LIMCoralRockall
> ### Title: Linear inverse model specification for the Deep-water Coral food
> ### web at Rockall Bank
> ### Aliases: LIMCoralRockall
> ### Keywords: datasets
>
> ### ** Examples
>
> Coral <- Flowmatrix(LIMCoralRockall)
>
> plotweb(Coral, main = "Deep Water Coral Foodweb, Rockall Bank",
+ sub = "mmolC/m2/day", lab.size = 0.8)
>
>
> ## Not run:
> ##D xr <- LIMCoralRockall$NUnknowns
> ##D i1 <- 1:(xr/2)
> ##D i2 <- (xr/2+1):xr
> ##D
> ##D pm <- par(mfrow = c(1, 1))
> ##D Simplest <- Ldei(LIMCoralRockall)$X
> ##D Ranges <- Xranges(LIMCoralRockall)
> ##D Plotranges(Ranges[i1, 1], Ranges[i1, 2], Simplest[i1], lab.cex = 0.7,
> ##D main = "Deep Water Coral - ranges part 1")
> ##D
> ##D Plotranges(Ranges[i2, 1], Ranges[i2, 2], Simplest[i2], lab.cex = 0.7,
> ##D main = "Deep Water Coral - ranges part 2")
> ##D par(mfrow = pm)
> ## End(Not run)
>
>
>
>
>
> dev.off()
null device
1
>