Last data update: 2014.03.03

R: laterAFCM: this function calculates disjunctive table, Burt...
laterAFCMR Documentation

laterAFCM: this function calculates disjunctive table, Burt table and contributions for multiple correspondence analysis (MCA).

Description

Calculates disjunctive table, Burt table and contributions for MCA.

Usage

  laterAFCM(data, scannf=FALSE, nf=2, saveDatadisj = FALSE, fileDatadisj = "Datadisj.csv",
  saveSumcolDatadisj = FALSE, fileSumcolDatadisj = "SumcolDatadisj.csv",
  saveDataburt = FALSE, fileDataburt = "Databurt.csv", 
  saveContributions = FALSE, fileContributions = "Contributions.csv")

Arguments

data

A data.frame with the qualitative variables which should be taken in account in the multiple correspondence analysis.

scannf

A logical value indicating whether the eigenvalues bar plot should be displayed; see ade4 package (by default scannf = FALSE).

nf

If scannf=FALSE, an integer indicating the number of kept axes; see ade4 package (by default nf = 2).

saveDatadisj

This arguments permits to save directly the results of the disjunctive table in a .csv file in the workspace of R. If savetable = "csv" there will be "." for the decimal point and a "," for the separator. If savetable = "csv2" there will be "," for the decimal point and a ";" for the separator. (by default savetable = FALSE)

fileDatadisj

This argument will work if savetable = "csv" or "csv2". It gives the name of the csv file saved (by default file = "Datadisj.csv")

saveSumcolDatadisj

This arguments permits to save directly the results of the sum of the column of the disjunctive table in a .csv file in the workspace of R. If savetable = "csv" there will be "." for the decimal point and a "," for the separator. If savetable = "csv2" there will be "," for the decimal point and a ";" for the separator. (by default savetable = FALSE)

fileSumcolDatadisj

This argument will work if savetable = "csv" or "csv2". It gives the name of the csv file saved (by default file = "SumcolDatadisj.csv")

saveDataburt

This arguments permits to save directly the results of the Burt table in a .csv file in the workspace of R. If savetable = "csv" there will be "." for the decimal point and a "," for the separator. If savetable = "csv2" there will be "," for the decimal point and a ";" for the separator. (by default savetable = FALSE)

fileDataburt

This argument will work if savetable = "csv" or "csv2". It gives the name of the csv file saved (by default file = "Databurt.csv")

saveContributions

This arguments permits to save directly the results of the contributions table in a .csv file in the workspace of R. If savetable = "csv" there will be "." for the decimal point and a "," for the separator. If savetable = "csv2" there will be "," for the decimal point and a ";" for the separator. (by default savetable = FALSE)

fileContributions

This argument will work if savetable = "csv" or "csv2". It gives the name of the csv file saved (by default file = "Contributions.csv")

Value

The function returns results of class "list".

Note

If you use this function please cite also ade4-package.

Author(s)

Borel A., Pouydebat E., Reghem E. <antony.borel@gmail.com> based on functions from Daniel Chessel, Anne-Beatrice Dufour and Stephane Dray, with contributions from Thibaut Jombart, Jean R. Lobry, Sebastien Ollier, Sandrine Pavoine and Jean Thioulouse. Package ade4: Analysis of Ecological Data : Exploratory and Euclidean methods in Environmental sciences.

References

Chessel D., Dufour A.-B. and Dray S., with contributions from Jombart T., Lobry J.R., Ollier S., Pavoine S. and Thioulouse J. Package ade4: Analysis of Ecological Data : Exploratory and Euclidean methods in Environmental sciences.

See Also

ade4,inertia.dudi, acm.disjonctif, acm.burt, dudi.acm

Examples

  data(laterdata)
  
  ## Without saving:
  laterAFCM(laterdata)

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(Laterality)
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/Laterality/laterAFCM.Rd_%03d_medium.png", width=480, height=480)
> ### Name: laterAFCM
> ### Title: laterAFCM: this function calculates disjunctive table, Burt
> ###   table and contributions for multiple correspondence analysis (MCA).
> ### Aliases: laterAFCM
> ### Keywords: correspondence AFCM MCA laterality manual preference
> 
> ### ** Examples
> 
>   data(laterdata)
>   
>   ## Without saving:
>   laterAFCM(laterdata)
$Datadisj
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