Plot function for an RLum.Data.Image S4 class object

Description

The function provides a standardised plot output for image data of an RLum.Data.ImageS4 class object, mainly using the plot functions provided by the raster package.

Usage

plot_RLum.Data.Image(object, par.local = TRUE, plot.type = "plot.raster",
  ...)

Arguments

Details

Details on the plot functions

Image is visualised as 2D plot usinng generic plot types provided by other packages.

Supported plot types:

plot.type = "plot.raster"

Uses the standard plot function for raster data from the package raster: plot. For each raster layer in a raster brick one plot is produced.

Arguments that are passed through the function call:

main,axes, xlab, ylab, xlim, ylim, col

plot.type = "plotRGB"

Uses the function plotRGB from the raster package. Only one image plot is produced as all layers in a brick a combined. This plot type is useful to see whether any signal is recorded by the camera.
Arguments that are passed through the function call:

main,axes, xlab, ylab, ext, interpolate, maxpixels, alpha, colNA, stretch

plot.type = "contour"

Uses the function contour plot function from the raster function (contour). For each raster layer one contour plot is produced. Arguments that are passed through the function call:

main,axes, xlab, ylab, xlim, ylim, col

Value

Returns a plot.

Function version

0.1 (2015-11-29 17:27:48)

Note

This function has been created to faciliate the plotting of image data imported by the function read_SPE2R. However, so far the function is not optimized to handle image data > ca. 200 MByte and thus plotting of such data is extremely slow.

Author(s)

Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne (France)
R Luminescence Package Team

References

-

See Also

RLum.Data.Image, plot, plot_RLum, raster,

Examples

##load data
data(ExampleData.RLum.Data.Image, envir = environment())

##plot data
plot_RLum.Data.Image(ExampleData.RLum.Data.Image)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(Luminescence)
Welcome to the R package Luminescence version 0.6.0 [Built: 2016-05-30 16:47:30 UTC]
An unbiased reviewer: 'The data is too poor to be published in QG, try a higher ranked journal.'
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/Luminescence/plot_RLum.Data.Image.Rd_%03d_medium.png", width=480, height=480)
> ### Name: plot_RLum.Data.Image
> ### Title: Plot function for an 'RLum.Data.Image' S4 class object
> ### Aliases: plot_RLum.Data.Image
> ### Keywords: aplot
> 
> ### ** Examples
> 
> 
> 
> ##load data
> data(ExampleData.RLum.Data.Image, envir = environment())
> 
> ##plot data
> plot_RLum.Data.Image(ExampleData.RLum.Data.Image)
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>