R: Plots methylation profiles over a specific region
plotMethProfile
R Documentation
Plots methylation profiles over a specific region
Description
Plots a smoothed methylation profile for each of the two testing groups.
Within each group, the mean of
methylation level is taken, smoothed and plotted, along with the individual
values.
# plot the 9th region in the Toy Data Set
data(rrbsDemo)
data(CpGsDemo)
plotMethProfile(rrbsDemo, CpGsDemo, 'H1-hESC', 'K562', 9)
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(M3D)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/M3D/plotMethProfile.Rd_%03d_medium.png", width=480, height=480)
> ### Name: plotMethProfile
> ### Title: Plots methylation profiles over a specific region
> ### Aliases: plotMethProfile
>
> ### ** Examples
>
> # plot the 9th region in the Toy Data Set
> data(rrbsDemo)
> data(CpGsDemo)
> plotMethProfile(rrbsDemo, CpGsDemo, 'H1-hESC', 'K562', 9)
>
>
>
>
>
> dev.off()
null device
1
>