R: OLS and Multivariate Analysis of Variance test for gene set...
MAVTgsa-package
R Documentation
OLS and Multivariate Analysis of Variance test for gene set analysis
Description
A gene set analysis function for one-sided test (OLS) and two-sided test (multivariate analysis of variance).
Three multiple comparison procedures, Dunnett, Tukey, and sequential pairwise comparison, are implemented.
MAVTgsa computes the p-values and FDR (false discovery rate) q-values for all gene sets.
The p-values for individual genes in a significant gene set are also listed.
MAVTgsa generates a GST-plot of the empirical distribution function of the ranked test statistics of a given gene set.
Details
Package:
MAVTgsa
Type:
Package
Version:
1.0
Date:
2012-10-04
License:
What license is it under?
LazyLoad:
yes
Author(s)
Chih-Yi Chien, Chen-An Tsai, Ching-Wei Chang, and James J. Chen