R: Selects OTUs for which MCMC-based parameter estimates are...
otuByAutocorr
R Documentation
Selects OTUs for which MCMC-based parameter estimates are reliable.
Description
Looks at autocorrelation among sampled parameter values.
Usage
otuByAutocorr(model, data, ac.cut=0.1)
Arguments
model
Model generated by mcmc.otu()
data
Dataset used to fit the model
ac.cut
Autocorrelation cutoff
Value
Vector of OTU names for which autocorrelation is less than ac.cut argument.
Author(s)
Mikhail V. Matz, University of Texas at Austin
<matz@utexas.edu>
References
Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Monica Medina Next-generation sequencing reveals cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico. PeerJ 2014 https://peerj.com/preprints/246/