Last data update: 2014.03.03

R: Mosaicplot for the data in Shannonci and Simpsonci
mosaicdivR Documentation

Mosaicplot for the data in Shannonci and Simpsonci

Description

Create a mosaicplot from objects of class Shannonci or Simpsonci

Usage

mosaicdiv(x, decreasing = NULL, ...)

Arguments

x

an object of class "Simpsonci" or "Shannonci" as can be obtained from calling Simpsonci or Shannonci

decreasing

a single logical value, indicating whether the species should be plotted in the current order (if decreasing=NULL), in decreasing order (if decreasing=TRUE), or in increasing order (if decreasing=FALSE)

...

further arguments to be passed to mosaicplot, see ?mosaicplot and ?par for details

Details

This function uses the counts in [["sample.estimate"]][["table"]] to produce a mosaicplot.

Value

A plot.

Examples


data(HCD)

HCDFam <- HCD[,-1]

SCI<-Simpsonci(X=HCDFam, f=HCD[,1])

mosaicdiv(SCI, decreasing=TRUE, col=rainbow(n=8))

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(MCPAN)
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/MCPAN/mosaicplot.Shannonci.Rd_%03d_medium.png", width=480, height=480)
> ### Name: mosaicdiv
> ### Title: Mosaicplot for the data in Shannonci and Simpsonci
> ### Aliases: mosaicdiv
> ### Keywords: hplot
> 
> ### ** Examples
> 
> 
> data(HCD)
> 
> HCDFam <- HCD[,-1]
> 
> SCI<-Simpsonci(X=HCDFam, f=HCD[,1])
> 
> mosaicdiv(SCI, decreasing=TRUE, col=rainbow(n=8))
Warning message:
In if (!class(x) %in% c("Shannonci", "Simpsonci")) { :
  the condition has length > 1 and only the first element will be used
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>