a numeric vector, the return value 'perm_case_11' got by meta.TradPerm method for certain study.
Trad_case_12
a numeric vector, the return value 'perm_case_12' got by meta.TradPerm method for certain study.
Trad_case_22
a numeric vector, the return value 'perm_case_22' got by meta.TradPerm method for certain study.
Trad_control_11
a numeric vector, the return value 'perm_control_11' got by meta.TradPerm method for certain study.
Trad_control_12
a numeric vector, the return value 'perm_control_12' got by meta.TradPerm method for certain study.
Trad_control_22
a numeric vector, the return value 'perm_control_22' got by meta.TradPerm method for certain study.
MC_case_11
a numeric vector, the return value 'perm_case_11' got by meta.MCPerm method for certain study.
MC_case_12
a numeric vector, the return value 'perm_case_12' got by meta.MCPerm method for certain study.
MC_case_22
a numeric vector, the return value 'perm_case_22' got by meta.MCPerm method for certain study.
MC_control_11
a numeric vector, the return value 'perm_control_11' got by meta.MCPerm method for certain study.
MC_control_12
a numeric vector, the return value 'perm_control_12' got by meta.MCPerm method for certain study.
MC_control_22
a numeric vector, the return value 'perm_control_22' got by meta.MCPerm method for certain study.
scatter_col
the color for scatter points of quantile-quantile plot, default value is 'black'.
line_col
the color of line which passes through the sample distribution probs quantiles, the first and
third quartiles. Default value is 'black'.
title
the main title(on top).
xlab,ylab
X axis label, default value is "Quantile of genotype count (TradPerm)".
Y axis label, default value is "Quantile of genotype count (MCPerm)".
Details
Separately plotting quantile-quantile plot for the return value(genotype count) of 'meta.TradPerm' and 'meta.MCPerm'
for certain study is to compare the simulative allele count distribution got by TradPerm and MCPerm method whether
are same.
MCPerm details see chisq.MCPerm.
TradPerm details see chisq.TradPerm..
Author(s)
Lanying Zhang and Yongshuai Jiang <jiangyongshuai@gmail.com>
References
William S Noble(Nat Biotechnol.2009): How does multiple testing correction work?