Function to translate between canonical and GROMOS amino acid abbreviations

Description

Converts an aminoacid naming scheme in the context of GROMOS (e.g. containing HISH) into canonical three- or one-letter codes.

Usage

translate_aminoacids( input,
                      switchMode)

Arguments

Author(s)

Christian Margreitter

Examples

# to one letter code
test <- c( "ALA", "HISA", "SER" )
MDplot::translate_aminoacids( test, switchMode = 2 )

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(MDplot)
Loading required package: MASS
Loading required package: RColorBrewer
Loading required package: gplots

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

Loading required package: gtools
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/MDplot/translate_aminoacids.Rd_%03d_medium.png", width=480, height=480)
> ### Name: translate_aminoacids
> ### Title: Function to translate between canonical and GROMOS amino acid
> ###   abbreviations
> ### Aliases: translate_aminoacids
> ### Keywords: aminoacids
> 
> ### ** Examples
> 
> # to one letter code
> test <- c( "ALA", "HISA", "SER" )
> MDplot::translate_aminoacids( test, switchMode = 2 )
[1] "ALA" "HIS" "SER"
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>