Last data update: 2014.03.03

 R: XRMSD plot in heatmap style
xrmsdR Documentation

XRMSD plot in heatmap style

Description

Plots an heatmap according to the RMSD values for a 2D snapshot matrix, based on molecular dynamics trajectories.

Usage

xrmsd( xrmsdValues,
       printLegend = TRUE,
       xaxisRange = NA,
       yaxisRange = NA,
       colours = NA,
       barePlot = FALSE,
       ... )

Arguments

xrmsdValues

Input matrix (three rows: x-values, y-values, RMSD-value). Can be generated by function load_xrmsd().

printLegend

If TRUE, a legend is printed on the right hand side of the plot.

xaxisRange

A vector of boundaries for the x-snapshots.

yaxisRange

A vector of boundaries for the y-snapshots.

colours

A vector with colour names for the span palette.

barePlot

Boolean, indicating whether the plot is to be made without any additional information.

...

Additional arguments (ellipsis).

Author(s)

Christian Margreitter

Examples

## Not run: 
# see "extdata/xrmsd_example.txt.gz" for format information
xrmsd( load_xrmsd( system.file( "extdata/xrmsd_example.txt.gz", package = "MDplot" ) ) )

## End(Not run)

Results


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO