Multiple sequence alignment by means of MEME.

Description

DNA sequences are aligned by means of MEME Version 4.4.0. (Multiple Expectation-Maximization for Motif Elicitation)

Usage

align.MEME(filein, fileout = "Sq.fa", iicc)

Arguments

Details

This function needs aaMI-package. This funtions works with meme<=4.3.0

Value

Output is a file in FASTA format with aligned nucleotide sequences.

Author(s)

Erola Pairo <epeiroatibec.pcb.ub.es> and Joan Maynou <joan.maynouatupc.edu>

See Also

align.clustalw, align.MUSCLE

Results