R Graphical Manual

Last data update: 2014.03.03

R: Multiple sequence alignment by means of ClustalW

align.clustalw

R Documentation

Multiple sequence alignment by means of ClustalW

DNA sequences are aligned by means of ClustalW (Multiple Sequence Alignment).

align.clustalw(filein, fileout = "Sq.fa", call)

`filein`	A set of nucleotide sequences in FASTA format.
`fileout`	Output file in FASTA format.
`call`	string of characters needed to call Clustalw from the working directory

This function needs aaMI-package

Fileout is a file in FASTA format with aligned nucleotide sequences.

Erola Pairo <epeiroatibec.pcb.ub.es> and Joan Maynou <joan.maynouatupc.edu>.