Last data update: 2014.03.03

R: Construct MInt object
mintR Documentation

Construct MInt object

Description

Constructs a MInt object that maintains the data and parameter estimates for the underlying Poisson-multivariate normal hierarchical model.

Usage

mint(y, x, fmla = ~1)

Arguments

y

A file path to the response matrix.

x

A file path to the design matrix.

fmla

An object of class “formula” (or one that can be coerced to that class): a symbolic description of the model to be fitted.

Value

mint A MInt object.

Examples

x <- system.file("extdata", "x.txt", package="MInt");
y <- system.file("extdata", "y.txt", package="MInt");
m <- mint(y,x,fmla = ~feature1 + feature2)

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(MInt)
Loading required package: glasso
Loading required package: trust
Loading required package: MASS
Loading required package: testthat
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/MInt/mint.Rd_%03d_medium.png", width=480, height=480)
> ### Name: mint
> ### Title: Construct MInt object
> ### Aliases: mint
> 
> ### ** Examples
> 
> x <- system.file("extdata", "x.txt", package="MInt");
> y <- system.file("extdata", "y.txt", package="MInt");
> m <- mint(y,x,fmla = ~feature1 + feature2)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>