R: Methylation Analysis of Next Generation Sequencing data.
MethTargetedNGS-package
R Documentation
Methylation Analysis of Next Generation Sequencing data.
Description
This package helps in visualizing methylation in CpG sites in NGS data for given datasets (normal/tumor) and to identify differentially methylated CpG sites in normal/tumor.
This package to help in perform profile hidden markov modelling of given sequences.
NOTE: For profile hidden markov model HMMER software is required
Details
Package:
MethTargetedNGS
Type:
Package
Version:
1.0
Date:
2015-01-20
License:
Artistic-2.0
Compare methylation status/pattern between samples.
*compare_samples(healthy,tumor)
Sequence alignment and create methylation pattern
*methAlign(sequence_fasta, ref_seq)
Author(s)
Muhammad Ahmer Jamil, Prof. Holger Frohlich, Priv.-Doz. Dr. Osman El-Maarri