Accessor functions for OTUset and TAXset objects

Description

These functions provide access to some of the slots of OTUset and TAXset objects. otuID returns the otuID slot of OTUset objects. sampleID returns the sampleID slot of both OTUset and TAXset objects. tax and tax<- return and replace the tax slot of TAXset objects.

Usage

    sampleID(object, ...)
    otuID(object, ...)
    tax(object, ...)
    tax(object)<-value

Arguments

Value

sampleID and otuID return a character. tax returns a data.frame.

See Also

ShortRead

Examples

## locate directory with data
dirPath <- system.file("extdata/Sogin_2006", package="OTUbase")

## read in data into OTUset object
soginOTU <- readOTUset(dirPath=dirPath, level="0.03", samplefile="sogin.groups", fastafile="sogin.fasta", otufile="sogin.unique.filter.fn.list", sampleADF="sample_metadata.txt")

## get the sampleID slot
sampleID(soginOTU) 

## get the otuID slot
otuID(soginOTU)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(OTUbase)
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit


Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: ShortRead
Loading required package: BiocParallel
Loading required package: Biostrings
Loading required package: XVector
Loading required package: Rsamtools
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: GenomicAlignments
Loading required package: SummarizedExperiment
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: vegan
Loading required package: permute
Loading required package: lattice
This is vegan 2.4-0
================================================================================
Welcome to OTUbase version 1.22.0

Attaching package: 'OTUbase'

The following object is masked from 'package:GenomicAlignments':

    seqnames

The following object is masked from 'package:SummarizedExperiment':

    seqnames

The following object is masked from 'package:GenomicRanges':

    seqnames

The following object is masked from 'package:GenomeInfoDb':

    seqnames

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/OTUbase/accessors.Rd_%03d_medium.png", width=480, height=480)
> ### Name: accessors
> ### Title: Accessor functions for OTUset and TAXset objects
> ### Aliases: otuID otuID,.OTUset-method sampleID sampleID,.OTUbase-method
> ###   tax tax,.TAXset-method tax<- tax<-,.TAXset-method
> ###   tax<-,.TAXset,data.frame-method
> 
> ### ** Examples
> 
> 
> ## locate directory with data
> dirPath <- system.file("extdata/Sogin_2006", package="OTUbase")
> 
> ## read in data into OTUset object
> soginOTU <- readOTUset(dirPath=dirPath, level="0.03", samplefile="sogin.groups", fastafile="sogin.fasta", otufile="sogin.unique.filter.fn.list", sampleADF="sample_metadata.txt")
Looking for column with names
> 
> ## get the sampleID slot
> sampleID(soginOTU) 
   [1] "53R"   "53R"   "115R"  "FS312" "112R"  "FS312" "FS396" "FS396" "FS396"
  [10] "115R"  "FS396" "138"   "FS312" "FS396" "115R"  "115R"  "FS396" "FS396"
  [19] "FS312" "FS312" "138"   "112R"  "FS396" "FS396" "FS312" "138"   "FS312"
  [28] "137"   "FS312" "FS312" "FS396" "FS312" "115R"  "137"   "FS312" "FS396"
  [37] "FS396" "115R"  "FS396" "FS312" "FS396" "112R"  "FS312" "112R"  "FS312"
  [46] "FS312" "115R"  "138"   "FS396" "FS312" "FS396" "137"   "FS312" "FS396"
  [55] "138"   "FS396" "53R"   "FS312" "FS396" "55R"   "53R"   "FS396" "FS312"
  [64] "FS312" "FS312" "53R"   "FS312" "137"   "FS396" "FS312" "112R"  "FS312"
  [73] "FS396" "FS396" "FS396" "FS312" "FS312" "FS312" "138"   "FS312" "FS312"
  [82] "FS396" "55R"   "FS396" "FS312" "FS312" "FS396" "112R"  "112R"  "FS396"
  [91] "FS396" "FS396" "53R"   "55R"   "137"   "112R"  "FS312" "137"   "FS312"
 [100] "FS312" "115R"  "FS396" "115R"  "FS396" "FS396" "FS396" "FS312" "FS396"
 [109] "115R"  "FS312" "112R"  "FS312" "115R"  "55R"   "FS396" "FS396" "FS396"
 [118] "FS396" "138"   "55R"   "FS312" "FS396" "FS396" "FS396" "FS396" "FS396"
 [127] "FS312" "FS396" "FS312" "FS396" "FS396" "115R"  "53R"   "FS396" "115R" 
 [136] "FS396" "FS396" "138"   "FS396" "FS312" "FS396" "FS396" "FS396" "FS396"
 [145] "FS312" "FS396" "55R"   "137"   "FS396" "115R"  "FS396" "53R"   "FS312"
 [154] "FS396" "FS396" "FS312" "112R"  "FS396" "FS312" "53R"   "FS312" "FS312"
 [163] "FS396" "FS312" "FS312" "FS396" "FS396" "112R"  "FS312" "138"   "FS396"
 [172] "FS396" "FS312" "FS396" "FS396" "138"   "FS396" "FS396" "137"   "115R" 
 [181] "138"   "FS396" "FS396" "138"   "FS396" "115R"  "FS312" "FS312" "FS396"
 [190] "FS396" "112R"  "FS396" "137"   "FS312" "FS396" "115R"  "FS312" "FS312"
 [199] "137"   "FS396" "FS312" "112R"  "112R"  "FS396" "FS396" "137"   "FS396"
 [208] "FS396" "FS396" "FS312" "FS396" "115R"  "FS396" "137"   "FS396" "FS312"
 [217] "FS312" "FS312" "FS396" "FS396" "FS312" "FS312" "FS312" "137"   "FS312"
 [226] "FS396" "FS396" "FS396" "FS312" "FS396" "FS312" "138"   "FS312" "137"  
 [235] "FS312" "FS312" "53R"   "FS396" "FS396" "FS312" "FS312" "FS396" "FS312"
 [244] "137"   "FS396" "FS312" "FS396" "112R"  "53R"   "FS312" "FS396" "FS396"
 [253] "FS396" "FS312" "115R"  "FS396" "FS312" "FS312" "FS396" "115R"  "FS396"
 [262] "53R"   "138"   "138"   "138"   "115R"  "112R"  "112R"  "112R"  "FS396"
 [271] "FS396" "115R"  "112R"  "137"   "FS312" "FS312" "FS312" "FS396" "53R"  
 [280] "FS396" "FS396" "FS312" "138"   "137"   "FS396" "FS396" "138"   "FS396"
 [289] "FS396" "FS396" "115R"  "FS396" "55R"   "137"   "112R"  "112R"  "FS396"
 [298] "FS312" "137"   "FS396" "137"   "137"   "FS396" "112R"  "FS396" "FS396"
 [307] "FS396" "FS312" "55R"   "FS312" "138"   "115R"  "FS396" "112R"  "FS312"
 [316] "FS396" "112R"  "FS312" "FS396" "115R"  "FS396" "FS396" "137"   "FS396"
 [325] "FS396" "FS312" "FS396" "138"   "137"   "115R"  "138"   "FS396" "FS396"
 [334] "FS312" "138"   "FS312" "FS396" "FS312" "FS396" "FS312" "FS396" "137"  
 [343] "FS312" "53R"   "53R"   "FS396" "FS396" "FS312" "FS312" "FS396" "FS396"
 [352] "FS396" "FS396" "FS396" "FS396" "115R"  "115R"  "FS396" "FS396" "112R" 
 [361] "FS396" "115R"  "FS396" "137"   "FS312" "53R"   "FS396" "FS396" "53R"  
 [370] "FS396" "FS312" "FS396" "FS396" "112R"  "FS312" "138"   "138"   "137"  
 [379] "112R"  "FS312" "FS396" "FS396" "138"   "137"   "FS396" "FS312" "FS396"
 [388] "138"   "FS312" "55R"   "FS312" "FS312" "FS396" "FS396" "FS312" "115R" 
 [397] "FS396" "FS396" "FS312" "FS312" "FS312" "FS396" "FS396" "FS312" "FS312"
 [406] "FS312" "FS396" "FS312" "FS312" "FS396" "137"   "55R"   "112R"  "112R" 
 [415] "138"   "112R"  "115R"  "FS312" "53R"   "FS396" "FS396" "FS396" "112R" 
 [424] "137"   "53R"   "FS396" "112R"  "112R"  "FS396" "112R"  "FS396" "53R"  
 [433] "FS396" "138"   "FS396" "115R"  "FS312" "112R"  "FS396" "115R"  "53R"  
 [442] "FS312" "137"   "137"   "FS396" "138"   "FS312" "FS312" "FS396" "FS396"
 [451] "137"   "FS396" "FS312" "FS312" "FS396" "FS312" "137"   "112R"  "FS396"
 [460] "FS312" "112R"  "FS312" "FS396" "137"   "FS312" "FS312" "FS312" "138"  
 [469] "138"   "FS396" "53R"   "FS396" "FS396" "FS312" "FS312" "115R"  "FS396"
 [478] "53R"   "FS396" "137"   "FS312" "FS396" "FS396" "FS312" "112R"  "115R" 
 [487] "55R"   "138"   "FS312" "112R"  "FS312" "138"   "FS396" "53R"   "112R" 
 [496] "FS312" "115R"  "115R"  "FS312" "FS312" "115R"  "FS396" "FS312" "FS396"
 [505] "FS396" "FS312" "137"   "FS396" "138"   "138"   "137"   "115R"  "FS396"
 [514] "138"   "FS396" "115R"  "FS312" "55R"   "FS312" "FS396" "112R"  "53R"  
 [523] "FS312" "FS312" "53R"   "FS396" "FS312" "FS396" "138"   "FS396" "FS396"
 [532] "FS396" "FS396" "112R"  "FS396" "FS396" "FS312" "137"   "FS312" "FS396"
 [541] "112R"  "FS312" "FS312" "115R"  "115R"  "FS396" "53R"   "137"   "FS396"
 [550] "FS396" "112R"  "115R"  "FS312" "FS396" "55R"   "115R"  "FS312" "FS312"
 [559] "53R"   "FS312" "FS312" "FS312" "FS312" "FS396" "55R"   "FS312" "FS396"
 [568] "FS312" "FS312" "112R"  "FS312" "FS312" "FS312" "53R"   "FS312" "115R" 
 [577] "112R"  "FS312" "FS312" "FS396" "FS312" "FS312" "137"   "55R"   "FS312"
 [586] "FS396" "112R"  "FS396" "FS312" "FS312" "FS312" "138"   "115R"  "55R"  
 [595] "FS396" "55R"   "FS396" "FS396" "53R"   "137"   "FS396" "FS312" "FS312"
 [604] "FS312" "FS312" "FS396" "112R"  "FS312" "FS312" "FS396" "FS312" "FS312"
 [613] "112R"  "FS396" "FS312" "FS312" "FS396" "138"   "137"   "FS396" "FS396"
 [622] "137"   "FS312" "FS396" "53R"   "112R"  "FS312" "FS396" "FS396" "FS396"
 [631] "FS396" "FS396" "115R"  "FS312" "138"   "FS396" "FS396" "FS312" "138"  
 [640] "FS396" "137"   "FS312" "53R"   "FS396" "FS312" "137"   "FS396" "138"  
 [649] "FS396" "FS396" "FS312" "FS396" "FS396" "FS312" "FS396" "53R"   "FS396"
 [658] "53R"   "FS312" "53R"   "FS396" "FS396" "FS312" "FS396" "138"   "138"  
 [667] "FS312" "115R"  "FS312" "55R"   "FS396" "FS396" "FS396" "53R"   "FS312"
 [676] "137"   "FS396" "53R"   "53R"   "FS396" "FS396" "55R"   "137"   "FS396"
 [685] "FS396" "FS312" "FS396" "FS396" "112R"  "FS312" "FS312" "FS312" "FS396"
 [694] "FS396" "FS312" "FS396" "53R"   "FS396" "55R"   "FS396" "55R"   "138"  
 [703] "55R"   "53R"   "115R"  "FS396" "FS312" "FS396" "FS312" "138"   "138"  
 [712] "FS312" "115R"  "FS396" "FS396" "115R"  "FS396" "112R"  "FS396" "FS312"
 [721] "137"   "FS312" "FS312" "FS312" "FS396" "FS312" "115R"  "FS312" "FS312"
 [730] "FS312" "112R"  "137"   "FS312" "FS312" "53R"   "115R"  "FS312" "FS396"
 [739] "FS312" "FS396" "55R"   "FS396" "138"   "FS396" "FS396" "FS396" "137"  
 [748] "138"   "FS396" "FS396" "FS396" "FS396" "FS312" "115R"  "FS312" "FS396"
 [757] "FS312" "FS396" "FS396" "FS312" "138"   "FS312" "FS396" "FS396" "138"  
 [766] "FS396" "FS396" "53R"   "FS396" "FS312" "115R"  "53R"   "FS312" "FS396"
 [775] "FS312" "FS312" "53R"   "FS396" "FS312" "115R"  "FS396" "112R"  "115R" 
 [784] "FS396" "FS312" "137"   "137"   "138"   "138"   "FS396" "53R"   "138"  
 [793] "FS396" "115R"  "53R"   "115R"  "138"   "FS396" "FS396" "FS396" "138"  
 [802] "115R"  "112R"  "FS396" "FS312" "112R"  "112R"  "FS312" "FS396" "115R" 
 [811] "FS312" "112R"  "53R"   "FS396" "137"   "FS396" "115R"  "55R"   "FS396"
 [820] "55R"   "112R"  "55R"   "FS396" "137"   "112R"  "FS396" "FS396" "53R"  
 [829] "FS396" "FS312" "53R"   "FS312" "137"   "53R"   "FS396" "FS312" "FS396"
 [838] "115R"  "53R"   "FS396" "112R"  "138"   "112R"  "FS312" "FS312" "FS312"
 [847] "FS396" "137"   "FS396" "55R"   "55R"   "FS312" "FS396" "FS312" "FS396"
 [856] "FS396" "FS396" "FS396" "53R"   "138"   "FS396" "138"   "FS396" "FS396"
 [865] "137"   "FS396" "FS396" "55R"   "115R"  "FS312" "137"   "FS396" "FS312"
 [874] "FS396" "137"   "112R"  "FS312" "FS312" "FS396" "112R"  "FS312" "FS312"
 [883] "115R"  "137"   "53R"   "FS396" "115R"  "137"   "FS396" "FS396" "FS312"
 [892] "FS396" "FS396" "138"   "112R"  "FS396" "FS312" "FS396" "112R"  "FS396"
 [901] "FS396" "FS312" "FS396" "FS396" "FS396" "FS396" "137"   "FS396" "FS396"
 [910] "FS312" "FS396" "FS312" "FS312" "FS396" "FS396" "FS396" "FS312" "FS312"
 [919] "FS396" "138"   "FS312" "FS396" "FS396" "138"   "FS396" "FS396" "55R"  
 [928] "112R"  "FS396" "FS312" "FS396" "FS396" "112R"  "FS396" "FS396" "FS396"
 [937] "FS396" "112R"  "55R"   "FS312" "FS312" "FS396" "FS396" "FS312" "112R" 
 [946] "FS396" "53R"   "53R"   "FS312" "138"   "FS396" "112R"  "137"   "FS396"
 [955] "112R"  "FS396" "115R"  "FS396" "FS312" "137"   "138"   "FS312" "FS312"
 [964] "FS396" "115R"  "FS312" "FS312" "FS396" "FS312" "FS312" "FS312" "55R"  
 [973] "FS312" "FS396" "115R"  "FS312" "115R"  "FS396" "112R"  "112R"  "FS396"
 [982] "FS396" "FS396" "115R"  "115R"  "137"   "FS396" "115R"  "137"   "FS312"
 [991] "53R"   "55R"   "FS396" "115R"  "FS396" "53R"   "112R"  "115R"  "138"  
[1000] "55R"  
> 
> ## get the otuID slot
> otuID(soginOTU)
   [1] "otu221" "otu250" "otu116" "otu385" "otu59"  "otu95"  "otu170" "otu170"
   [9] "otu164" "otu14"  "otu164" "otu386" "otu274" "otu228" "otu14"  "otu252"
  [17] "otu31"  "otu202" "otu262" "otu245" "otu370" "otu14"  "otu199" "otu360"
  [25] "otu182" "otu61"  "otu24"  "otu108" "otu29"  "otu384" "otu164" "otu40" 
  [33] "otu77"  "otu1"   "otu262" "otu190" "otu96"  "otu362" "otu164" "otu176"
  [41] "otu164" "otu340" "otu156" "otu364" "otu262" "otu64"  "otu12"  "otu252"
  [49] "otu175" "otu349" "otu191" "otu7"   "otu372" "otu296" "otu159" "otu164"
  [57] "otu389" "otu29"  "otu326" "otu21"  "otu14"  "otu164" "otu40"  "otu262"
  [65] "otu28"  "otu362" "otu262" "otu364" "otu184" "otu148" "otu111" "otu24" 
  [73] "otu140" "otu164" "otu179" "otu154" "otu40"  "otu28"  "otu277" "otu78" 
  [81] "otu170" "otu170" "otu3"   "otu164" "otu156" "otu103" "otu164" "otu43" 
  [89] "otu81"  "otu191" "otu320" "otu127" "otu19"  "otu389" "otu63"  "otu291"
  [97] "otu28"  "otu34"  "otu24"  "otu96"  "otu397" "otu164" "otu138" "otu144"
 [105] "otu127" "otu238" "otu373" "otu68"  "otu21"  "otu174" "otu251" "otu29" 
 [113] "otu252" "otu45"  "otu186" "otu127" "otu191" "otu164" "otu359" "otu12" 
 [121] "otu29"  "otu236" "otu173" "otu170" "otu342" "otu164" "otu24"  "otu179"
 [129] "otu262" "otu330" "otu361" "otu278" "otu355" "otu164" "otu337" "otu170"
 [137] "otu289" "otu14"  "otu303" "otu96"  "otu165" "otu194" "otu180" "otu179"
 [145] "otu266" "otu164" "otu307" "otu126" "otu361" "otu245" "otu164" "otu389"
 [153] "otu29"  "otu323" "otu164" "otu90"  "otu243" "otu179" "otu374" "otu225"
 [161] "otu70"  "otu46"  "otu164" "otu196" "otu350" "otu179" "otu164" "otu364"
 [169] "otu169" "otu247" "otu164" "otu326" "otu270" "otu198" "otu127" "otu376"
 [177] "otu131" "otu164" "otu362" "otu364" "otu389" "otu194" "otu94"  "otu20" 
 [185] "otu164" "otu386" "otu180" "otu262" "otu299" "otu198" "otu292" "otu186"
 [193] "otu363" "otu29"  "otu170" "otu389" "otu101" "otu14"  "otu75"  "otu361"
 [201] "otu25"  "otu10"  "otu278" "otu164" "otu103" "otu41"  "otu132" "otu114"
 [209] "otu164" "otu46"  "otu317" "otu14"  "otu170" "otu389" "otu164" "otu96" 
 [217] "otu141" "otu262" "otu186" "otu378" "otu318" "otu262" "otu100" "otu67" 
 [225] "otu54"  "otu268" "otu148" "otu351" "otu28"  "otu191" "otu28"  "otu260"
 [233] "otu193" "otu51"  "otu28"  "otu134" "otu39"  "otu164" "otu192" "otu96" 
 [241] "otu265" "otu346" "otu28"  "otu1"   "otu164" "otu53"  "otu172" "otu33" 
 [249] "otu74"  "otu270" "otu360" "otu191" "otu183" "otu156" "otu389" "otu104"
 [257] "otu96"  "otu40"  "otu176" "otu386" "otu203" "otu18"  "otu69"  "otu17" 
 [265] "otu14"  "otu272" "otu209" "otu92"  "otu4"   "otu353" "otu164" "otu338"
 [273] "otu251" "otu224" "otu56"  "otu231" "otu29"  "otu324" "otu364" "otu204"
 [281] "otu129" "otu96"  "otu363" "otu212" "otu130" "otu344" "otu389" "otu164"
 [289] "otu164" "otu164" "otu278" "otu164" "otu14"  "otu79"  "otu18"  "otu339"
 [297] "otu191" "otu96"  "otu218" "otu164" "otu143" "otu389" "otu166" "otu306"
 [305] "otu187" "otu281" "otu325" "otu147" "otu18"  "otu25"  "otu233" "otu9"  
 [313] "otu164" "otu158" "otu284" "otu322" "otu371" "otu185" "otu170" "otu364"
 [321] "otu245" "otu164" "otu214" "otu203" "otu164" "otu155" "otu127" "otu390"
 [329] "otu279" "otu76"  "otu232" "otu164" "otu129" "otu180" "otu11"  "otu182"
 [337] "otu361" "otu262" "otu164" "otu217" "otu354" "otu249" "otu23"  "otu109"
 [345] "otu389" "otu164" "otu164" "otu164" "otu262" "otu61"  "otu198" "otu133"
 [353] "otu301" "otu282" "otu179" "otu389" "otu14"  "otu179" "otu134" "otu321"
 [361] "otu356" "otu12"  "otu164" "otu389" "otu262" "otu311" "otu187" "otu164"
 [369] "otu14"  "otu44"  "otu286" "otu164" "otu164" "otu234" "otu262" "otu146"
 [377] "otu117" "otu152" "otu39"  "otu380" "otu164" "otu194" "otu388" "otu14" 
 [385] "otu282" "otu30"  "otu202" "otu14"  "otu40"  "otu392" "otu24"  "otu46" 
 [393] "otu84"  "otu164" "otu96"  "otu307" "otu129" "otu191" "otu237" "otu24" 
 [401] "otu96"  "otu188" "otu168" "otu143" "otu262" "otu262" "otu164" "otu262"
 [409] "otu262" "otu201" "otu58"  "otu55"  "otu242" "otu36"  "otu38"  "otu306"
 [417] "otu389" "otu37"  "otu21"  "otu164" "otu372" "otu164" "otu105" "otu107"
 [425] "otu389" "otu310" "otu230" "otu42"  "otu203" "otu364" "otu191" "otu369"
 [433] "otu120" "otu365" "otu198" "otu157" "otu135" "otu100" "otu164" "otu18" 
 [441] "otu242" "otu262" "otu14"  "otu138" "otu319" "otu144" "otu96"  "otu96" 
 [449] "otu194" "otu18"  "otu395" "otu194" "otu28"  "otu262" "otu129" "otu25" 
 [457] "otu389" "otu88"  "otu334" "otu96"  "otu221" "otu28"  "otu199" "otu394"
 [465] "otu262" "otu333" "otu270" "otu14"  "otu14"  "otu164" "otu221" "otu170"
 [473] "otu164" "otu47"  "otu66"  "otu39"  "otu312" "otu122" "otu164" "otu244"
 [481] "otu162" "otu326" "otu86"  "otu135" "otu250" "otu12"  "otu135" "otu138"
 [489] "otu28"  "otu57"  "otu46"  "otu80"  "otu125" "otu363" "otu399" "otu28" 
 [497] "otu389" "otu26"  "otu262" "otu262" "otu21"  "otu164" "otu372" "otu170"
 [505] "otu164" "otu360" "otu83"  "otu164" "otu389" "otu43"  "otu309" "otu121"
 [513] "otu299" "otu109" "otu170" "otu252" "otu262" "otu398" "otu28"  "otu295"
 [521] "otu328" "otu336" "otu264" "otu96"  "otu107" "otu298" "otu87"  "otu201"
 [529] "otu14"  "otu357" "otu360" "otu200" "otu164" "otu20"  "otu164" "otu203"
 [537] "otu152" "otu234" "otu262" "otu85"  "otu239" "otu254" "otu270" "otu8"  
 [545] "otu20"  "otu180" "otu1"   "otu14"  "otu293" "otu187" "otu290" "otu386"
 [553] "otu152" "otu164" "otu6"   "otu41"  "otu227" "otu96"  "otu393" "otu40" 
 [561] "otu177" "otu270" "otu273" "otu178" "otu212" "otu270" "otu96"  "otu211"
 [569] "otu28"  "otu389" "otu262" "otu97"  "otu91"  "otu336" "otu266" "otu106"
 [577] "otu370" "otu195" "otu96"  "otu164" "otu101" "otu23"  "otu14"  "otu395"
 [585] "otu46"  "otu168" "otu253" "otu258" "otu262" "otu139" "otu28"  "otu39" 
 [593] "otu240" "otu50"  "otu171" "otu389" "otu170" "otu265" "otu138" "otu99" 
 [601] "otu191" "otu164" "otu262" "otu96"  "otu259" "otu164" "otu364" "otu28" 
 [609] "otu24"  "otu352" "otu262" "otu382" "otu112" "otu326" "otu24"  "otu156"
 [617] "otu326" "otu386" "otu138" "otu168" "otu379" "otu224" "otu262" "otu127"
 [625] "otu52"  "otu10"  "otu40"  "otu164" "otu165" "otu164" "otu164" "otu104"
 [633] "otu389" "otu263" "otu14"  "otu267" "otu164" "otu262" "otu207" "otu137"
 [641] "otu110" "otu40"  "otu395" "otu194" "otu25"  "otu205" "otu163" "otu279"
 [649] "otu164" "otu164" "otu83"  "otu124" "otu127" "otu182" "otu320" "otu389"
 [657] "otu124" "otu138" "otu29"  "otu14"  "otu353" "otu127" "otu28"  "otu322"
 [665] "otu102" "otu219" "otu297" "otu226" "otu184" "otu359" "otu127" "otu164"
 [673] "otu164" "otu341" "otu270" "otu395" "otu375" "otu32"  "otu370" "otu164"
 [681] "otu167" "otu38"  "otu313" "otu164" "otu127" "otu96"  "otu170" "otu203"
 [689] "otu373" "otu262" "otu40"  "otu156" "otu256" "otu164" "otu302" "otu368"
 [697] "otu89"  "otu170" "otu221" "otu304" "otu387" "otu138" "otu160" "otu389"
 [705] "otu221" "otu161" "otu28"  "otu128" "otu46"  "otu105" "otu14"  "otu28" 
 [713] "otu12"  "otu164" "otu127" "otu389" "otu300" "otu73"  "otu257" "otu86" 
 [721] "otu19"  "otu270" "otu145" "otu24"  "otu164" "otu2"   "otu358" "otu235"
 [729] "otu262" "otu181" "otu206" "otu99"  "otu40"  "otu23"  "otu278" "otu275"
 [737] "otu60"  "otu262" "otu96"  "otu334" "otu395" "otu129" "otu233" "otu283"
 [745] "otu164" "otu119" "otu12"  "otu246" "otu325" "otu191" "otu236" "otu383"
 [753] "otu24"  "otu65"  "otu285" "otu168" "otu373" "otu127" "otu164" "otu354"
 [761] "otu61"  "otu48"  "otu164" "otu164" "otu5"   "otu334" "otu189" "otu250"
 [769] "otu198" "otu40"  "otu395" "otu110" "otu262" "otu170" "otu46"  "otu384"
 [777] "otu250" "otu179" "otu329" "otu221" "otu184" "otu115" "otu216" "otu187"
 [785] "otu25"  "otu252" "otu245" "otu377" "otu2"   "otu104" "otu14"  "otu389"
 [793] "otu164" "otu313" "otu389" "otu248" "otu147" "otu164" "otu361" "otu287"
 [801] "otu363" "otu14"  "otu18"  "otu164" "otu262" "otu229" "otu242" "otu136"
 [809] "otu373" "otu220" "otu28"  "otu251" "otu389" "otu168" "otu138" "otu173"
 [817] "otu14"  "otu13"  "otu164" "otu395" "otu239" "otu14"  "otu168" "otu395"
 [825] "otu251" "otu373" "otu210" "otu12"  "otu164" "otu40"  "otu138" "otu22" 
 [833] "otu16"  "otu134" "otu127" "otu28"  "otu348" "otu355" "otu39"  "otu325"
 [841] "otu234" "otu276" "otu340" "otu96"  "otu28"  "otu288" "otu265" "otu389"
 [849] "otu361" "otu343" "otu393" "otu40"  "otu179" "otu262" "otu168" "otu332"
 [857] "otu71"  "otu334" "otu389" "otu38"  "otu187" "otu396" "otu164" "otu164"
 [865] "otu280" "otu127" "otu164" "otu278" "otu389" "otu270" "otu12"  "otu164"
 [873] "otu28"  "otu164" "otu35"  "otu72"  "otu87"  "otu154" "otu103" "otu278"
 [881] "otu262" "otu381" "otu39"  "otu99"  "otu224" "otu294" "otu242" "otu14" 
 [889] "otu342" "otu129" "otu270" "otu347" "otu164" "otu335" "otu327" "otu187"
 [897] "otu93"  "otu164" "otu308" "otu314" "otu191" "otu49"  "otu175" "otu170"
 [905] "otu164" "otu261" "otu98"  "otu170" "otu127" "otu262" "otu164" "otu40" 
 [913] "otu28"  "otu164" "otu170" "otu361" "otu180" "otu47"  "otu164" "otu395"
 [921] "otu262" "otu320" "otu367" "otu14"  "otu356" "otu320" "otu215" "otu364"
 [929] "otu164" "otu316" "otu129" "otu203" "otu364" "otu191" "otu164" "otu360"
 [937] "otu322" "otu364" "otu14"  "otu262" "otu222" "otu123" "otu261" "otu138"
 [945] "otu234" "otu315" "otu389" "otu213" "otu96"  "otu1"   "otu61"  "otu113"
 [953] "otu27"  "otu331" "otu208" "otu345" "otu395" "otu164" "otu255" "otu223"
 [961] "otu391" "otu150" "otu269" "otu322" "otu364" "otu274" "otu197" "otu164"
 [969] "otu262" "otu96"  "otu118" "otu271" "otu23"  "otu129" "otu386" "otu28" 
 [977] "otu278" "otu164" "otu305" "otu153" "otu164" "otu320" "otu129" "otu364"
 [985] "otu393" "otu142" "otu164" "otu149" "otu82"  "otu62"  "otu389" "otu151"
 [993] "otu127" "otu39"  "otu164" "otu241" "otu366" "otu389" "otu106" "otu15" 
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>