Calculate absolute correlations among gene pairs

Description

Calculate absolute correlations among gene pairs

Usage

AbsCor(DataIn, method="pearson", diagNA=TRUE)

Arguments

Value

Output is a gene-by-gene matrix; the i, j th entry shows the absolute correlation of the ith and jth gene.

Author(s)

Ning Leng

Examples

AbsCor(matrix(rnorm(10),ncol=5))

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(Oscope)
Loading required package: EBSeq
Loading required package: blockmodeling
Loading required package: gplots

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

Loading required package: testthat
Loading required package: cluster
Loading required package: BiocParallel
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/Oscope/AbsCor.Rd_%03d_medium.png", width=480, height=480)
> ### Name: AbsCor
> ### Title: Calculate absolute correlations among gene pairs
> ### Aliases: AbsCor
> 
> ### ** Examples
> 
> AbsCor(matrix(rnorm(10),ncol=5))
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>